Download fiji Free Java Code

Description

The jQuery Fiji project is a repository for various widgets built upon the jQuery UI widget library.

Icons

fiji

Source Files

The download file fiji-master.zip has the following entries.


.gitattributes/*from  w  w w.  ja  v a 2s . c om*/
.gitignore
.gitmodules
.mailmap
Build.sh
Contents/Info.plist
Contents/Resources/Fiji.icns
LICENSES
Makefile
README.md
bin/.gitignore
bin/ImageJ.sh
bin/analyze-dependencies.bsh
bin/build-itk.sh
bin/build-last-imagej-versions.sh
bin/build-launcher.sh
bin/build-retrotranslator.sh
bin/calculate-checksums.bsh
bin/check-class-version.sh
bin/checkout-jdk.py
bin/cleanup.sh
bin/combined-gource-video.bsh
bin/commit-for-jar.bsh
bin/commit-plugin.py
bin/commit-submodule.py
bin/compat.py
bin/compat_jython.py
bin/configure-submodule.py
bin/copy-file.bsh
bin/create-jnlp.sh
bin/deserialize.bsh
bin/download-launchers.sh
bin/eclipse-project-generator.bsh
bin/enumerate-java-package.bsh
bin/find-jar-for-class.bsh
bin/find-package-directory-mismatches.py
bin/fix-java6-classes.sh
bin/force-glibc-compat.sh
bin/generate-download-arrow.py
bin/generate-fiji-images.py
bin/generate-finder-background.py
bin/generate-finder-dsstore.perl
bin/get-sample-images.py
bin/gitignore-in-submodules.sh
bin/googlecode_upload.py
bin/grant-all.py
bin/iconv.py
bin/identify-commit.py
bin/imagej-rootbeer.sh
bin/install-java3d.sh
bin/intellij-project-generator.bsh
bin/list-main-classes.bsh
bin/log-plugin-commits.bsh
bin/make-7z.py
bin/make-app.py
bin/make-dmg.py
bin/make-ij1-ico.bsh
bin/make-tar.py
bin/make-zip.py
bin/mark-exes-as-executable.sh
bin/maven.sh
bin/mpicbg-dependencees.bsh
bin/netbeans-project-generator.bsh
bin/open-in-gitweb.sh
bin/pdf-concat.py
bin/pdf-extract-images.py
bin/pdf-recompress.bsh
bin/pdf-reverse-pages.bsh
bin/pdf-rotate.py
bin/plugin-documentation-list.py
bin/plugin-list-parser.py
bin/pomize-project.bsh
bin/prepare-wiki-screenshot.py
bin/projects-generator.bsh
bin/ready-for-upload.bsh
bin/recalculate-dependencies.py
bin/renaming-merge.sh
bin/screenshot.py
bin/signJars.sh
bin/start-windows-jenkins-slave.sh
bin/summarize-git-log.sh
bin/synchronize-db.xml.gz.py
bin/tar2fiji.dmg.sh
bin/testcharsets.sh
bin/tijmp-build.sh
bin/topic-branches.sh
bin/up-to-date-check.py
bin/update-fiji.py
bin/update-launcher.sh
bin/updater-fix.js
bin/updater-jar-urls.bsh
bin/upload-bf4.sh
bin/upload-bf5.sh
bin/upload-mirrors.sh
bin/upload-to-googlecode.sh
bin/upload-update-site.sh
bin/verify-fiji.sc.sh
bin/which-jar-has-plugin.py
bin/wiki-monitor.py
bin/write-headless-jar.bsh
debian/.gitignore
debian/README.Debian
debian/README.plugins
debian/TODO
debian/build-command
debian/build-dependencies
debian/build-in-i386-chroot.py
debian/changelog
debian/common.py
debian/compat
debian/complete-build
debian/control
debian/control.template
debian/copyright
debian/create-i386-chroot.py
debian/dirs
debian/docs
debian/etc-default-fiji
debian/fiji-autocomplete.copyright
debian/fiji-barthel-plugins.copyright
debian/fiji-base.copyright
debian/fiji-bunwarpj.copyright
debian/fiji-color-histogram.copyright
debian/fiji-db-registration.copyright
debian/fiji-default.ex
debian/fiji-doc.docs
debian/fiji-doc.install
debian/fiji-edu-mines-jtk.copyright
debian/fiji-ij-imageio.copyright
debian/fiji-image5d.copyright
debian/fiji-imagej.copyright
debian/fiji-imglib.copyright
debian/fiji-io.copyright
debian/fiji-jpedal.copyright
debian/fiji-jruby.copyright
debian/fiji-jython.copyright
debian/fiji-loci-tools.copyright
debian/fiji-lsm-reader.copyright
debian/fiji-lsm-toolbox.copyright
debian/fiji-mip.copyright
debian/fiji-mpicbg.copyright
debian/fiji-mtrack2.copyright
debian/fiji-plugins.copyright
debian/fiji-rsyntaxtextarea.copyright
debian/fiji-scripting.copyright
debian/fiji-tcljava.copyright
debian/fiji-tracer.README.Debian
debian/fiji-tracer.copyright
debian/fiji-trakem2.copyright
debian/fiji-vib.copyright
debian/fiji-view5d.copyright
debian/fiji-weka.copyright
debian/fiji.1
debian/fiji.copyright
debian/fiji.desktop
debian/fiji.doc-base.EX
debian/fiji.manpages
debian/fiji.menu
debian/find-non-fiji-jars.py
debian/generate-debian-fiji-plugins-copyright.sh
debian/java-home
debian/mapping.json
debian/package-extras/default-description
debian/package-extras/fiji-autocomplete/description
debian/package-extras/fiji-barthel-plugins/description
debian/package-extras/fiji-base/description
debian/package-extras/fiji-bunwarpj/description
debian/package-extras/fiji-color-histogram/description
debian/package-extras/fiji-default.ex/description
debian/package-extras/fiji-doc.docs/description
debian/package-extras/fiji-doc.install/description
debian/package-extras/fiji-edu-mines-jtk/description
debian/package-extras/fiji-examples/description
debian/package-extras/fiji-ij-imageio/description
debian/package-extras/fiji-imagej/description
debian/package-extras/fiji-imglib/description
debian/package-extras/fiji-io/description
debian/package-extras/fiji-jai/description
debian/package-extras/fiji-jpedal/description
debian/package-extras/fiji-jruby/description
debian/package-extras/fiji-loci-tools/description
debian/package-extras/fiji-lsm-reader/description
debian/package-extras/fiji-lsm-toolbox/description
debian/package-extras/fiji-luts/description
debian/package-extras/fiji-mip/description
debian/package-extras/fiji-mpicbg/description
debian/package-extras/fiji-mtrack2/description
debian/package-extras/fiji-plugins/description
debian/package-extras/fiji-rsyntaxtextarea/description
debian/package-extras/fiji-scripting/description
debian/package-extras/fiji-tcljava/description
debian/package-extras/fiji-trakem2/description
debian/package-extras/fiji-vib/description
debian/package-extras/fiji-view5d/description
debian/package-extras/fiji-zs/description
debian/package-extras/fiji/description
debian/postinst.ex
debian/postrm.ex
debian/preinst.ex
debian/prerm.ex
debian/rewrite-pom-files.py
debian/rules
debian/simple-launcher
debian/update-debian.py
debian/upload-to-pacific.py
debian/watch.ex
debian/weekly-build.sh
images/fiji-logo-1.0-128x128.png
images/fiji-logo-1.0-256x256.png
images/fiji-logo-1.0.svg
images/fiji-logo-16x16.xpm
images/fiji-logo-32x32-b.xpm
images/fiji-logo-32x32.xpm
images/fiji.ico
images/function.png
images/icon-flat.png
images/icon.png
images/ij1.ico
images/var.png
includes/jni.h
includes/jni_md.h
jars/.gitignore
luts/16_colors.lut
luts/5_ramps.lut
luts/6_shades.lut
luts/Cyan Hot.lut
luts/Green Fire Blue.lut
luts/HiLo.lut
luts/ICA.lut
luts/ICA2.lut
luts/ICA3.lut
luts/Magenta Hot.lut
luts/Orange Hot.lut
luts/README.txt
luts/Rainbow RGB.lut
luts/Red Hot.lut
luts/Thermal.lut
luts/Yellow Hot.lut
luts/blue_orange_icb.lut
luts/brgbcmyw.lut
luts/cool.lut
luts/edges.lut
luts/gem.lut
luts/glasbey.lut
luts/glow.lut
luts/phase.lut
luts/physics.lut
luts/royal.lut
luts/sepia.lut
luts/smart.lut
luts/thal.lut
luts/thallium.lut
luts/unionjack.lut
macros/ImportResultsTable.txt
macros/StartupMacros.fiji.ijm
macros/listManagement.txt
macros/toolsets/Clear Custom Tools.txt
macros/toolsets/Drawing Tools.txt
macros/toolsets/Lookup Tables.txt
modules/pom.xml
native/FFMPEG_IO/.gitignore
native/FFMPEG_IO/ffmpeg/pom.xml
native/FFMPEG_IO/ffmpeg/src/main/java/fiji/ffmpeg/CompileFFMPEG.java
native/FFMPEG_IO/ffmpeg/src/main/java/fiji/ffmpeg/GenerateFFMPEGClasses.java
native/FFMPEG_IO/ffmpeg/src/other/c/avlog.c
native/FFMPEG_IO/plugin/pom.xml
native/FFMPEG_IO/plugin/src/main/java/fiji/ffmpeg/Exporter.java
native/FFMPEG_IO/plugin/src/main/java/fiji/ffmpeg/FFMPEG.java
native/FFMPEG_IO/plugin/src/main/java/fiji/ffmpeg/FFMPEGSingle.java
native/FFMPEG_IO/plugin/src/main/java/fiji/ffmpeg/IJProgress.java
native/FFMPEG_IO/plugin/src/main/java/fiji/ffmpeg/IO.java
native/FFMPEG_IO/plugin/src/main/java/fiji/ffmpeg/Importer.java
native/FFMPEG_IO/plugin/src/main/java/fiji/ffmpeg/JNALibraryLoader.java
native/FFMPEG_IO/plugin/src/main/java/fiji/ffmpeg/Progress.java
native/FFMPEG_IO/plugin/src/main/resources/plugins.config
native/FFMPEG_IO/plugin/src/test/java/fiji/ffmpeg/FFMPEG_IO_Test.java
native/FFMPEG_IO/pom.xml
native/JNI_Example/.gitignore
native/JNI_Example/pom.xml
native/JNI_Example/src/main/c/JNI_Example.c
native/JNI_Example/src/main/java/JNI_Example.java
native/JNI_Example/src/main/resources/plugins.config
plugins/Analyze/Dynamic_ROI_Profiler.clj
plugins/Analyze/Measure_RGB.txt
plugins/Examples/Add_Popup_Split_Channels.bsh
plugins/Examples/Anaglyph_for_Red_Cyan_glasses.rb
plugins/Examples/Blobs_Demo_in_Ruby.rb
plugins/Examples/Command_Launchers/Command_Launcher_BeanShell.bsh
plugins/Examples/Command_Launchers/Command_Launcher_Clojure.clj
plugins/Examples/Command_Launchers/Command_Launcher_Javascript.js
plugins/Examples/Command_Launchers/Command_Launcher_Python.py
plugins/Examples/Command_Launchers/Command_Launcher_Ruby.rb
plugins/Examples/CoverMaker/Cover_Maker.py
plugins/Examples/CoverMaker/Prepare_Cover_Maker_Database.py
plugins/Examples/Delayed_Snapshot.py
plugins/Examples/Delayed_Snapshot_Window.bsh
plugins/Examples/Edit_LUT_As_Text.py
plugins/Examples/Extended_Profile_Plot.bsh
plugins/Examples/Fiji_Cube.ijm
plugins/Examples/Fiji_Logo_3D.js
plugins/Examples/Find_Dimension_of_Raw_Image.py
plugins/Examples/Image_To_Tool_Icon.bsh
plugins/Examples/Multithreaded_Image_Processing.clj
plugins/Examples/Multithreaded_Image_Processing_in_Javascript.js
plugins/Examples/Plasma_Cloud.rb
plugins/Examples/Same_Slice_in_Multiple_Images.rb
plugins/Examples/Scala_Test.scala
plugins/Examples/The_Hue_Game.bsh
plugins/Examples/TrakEM2_Add_Balls.java
plugins/Examples/TrakEM2_Example_Scripts/Homogenize_Ball_Radius.py
plugins/Examples/TrakEM2_Example_Scripts/Measure_AreaLists.py
plugins/Examples/TrakEM2_Example_Scripts/T2_Select_All.py
plugins/Examples/TrakEM2_Example_Scripts/T2_set_all_transforms_to_identity.py
plugins/Examples/TrakEM2_Example_Scripts/extract_stack_under_arealist.py
plugins/Examples/blend_two_images.clj
plugins/Examples/celsius_to_fahrenheit.clj
plugins/Examples/chess_.py
plugins/Examples/compose_rgb-stacks.bsh
plugins/Examples/downsample_.js
plugins/Examples/list_all_threads.py
plugins/Examples/random_noise_example.clj
plugins/JRuby/imagej.rb
plugins/Macros/About Plugin Macros
plugins/Macros/About_Plugin_Macros.txt
plugins/Macros/Bulls_Eye.txt
plugins/Macros/Polygon_.txt
plugins/Macros/RGB_Histogram.txt
plugins/Macros/batch_convert_any_to_tif.txt
plugins/Scripts/File/Make_Screencast.bsh
plugins/Scripts/File/Open_Samples/Adelsons_Squares.ijm
plugins/Scripts/File/Open_Samples/Spirals_.ijm
plugins/Scripts/Image/Adjust/Scale_to_DPI.js
plugins/Scripts/Image/Color/Set_Color_By_Wavelength.ijm
plugins/Scripts/Image/Hyperstacks/Temporal-Color_Code.ijm
plugins/Scripts/Plugins/Registration/Correct_3D_drift.py
plugins/Scripts/Plugins/Utilities/Create_Desktop_Icon.bsh
plugins/Scripts/Plugins/Utilities/Find_Jar_For_Class.bsh
plugins/Scripts/Plugins/Utilities/Fix_Updater.js
plugins/Scripts/Plugins/Utilities/Record_Desktop.py
plugins/Scripts/Plugins/Utilities/Record_Window.py
plugins/Utilities/Close_All_Without_Saving.txt
pom.xml
resources/.gitignore
resources/ImageJ.png
resources/download-arrow.svg
resources/download_button2.svg
retro/ASM-LICENSE.txt
retro/LICENSE.txt
retro/backport-util-concurrent-3.1.jar
retro/readme.html
retro/retrotranslator-runtime-1.2.9.jar
retro/retrotranslator-transformer-1.2.9.jar
scripts/InstallJava3D.m
scripts/IsJava3DInstalled.m
scripts/Matlab3DViewerDemo_1.m
scripts/Matlab3DViewerDemo_2.m
scripts/Matlab3DViewerDemo_3.m
scripts/Matlab3DViewerIntroduction.m
scripts/Miji.m
scripts/Miji_Test.m
scripts/bfopen.m
scripts/copytoImg.m
scripts/copytoImgPlus.m
scripts/copytoMatlab.m
scripts/importTrackMateTracks.m
src-plugins/3D_Blob_Segmentation/.factorypath
src-plugins/3D_Blob_Segmentation/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/3D_Blob_Segmentation/pom.xml
src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java
src-plugins/3D_Blob_Segmentation/src/main/resources/plugins.config
src-plugins/3D_Objects_Counter/.factorypath
src-plugins/3D_Objects_Counter/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/3D_Objects_Counter/pom.xml
src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java
src-plugins/3D_Objects_Counter/src/main/java/Utilities/Object3D.java
src-plugins/3D_Objects_Counter/src/main/java/_3D_OC_Options.java
src-plugins/3D_Objects_Counter/src/main/java/_3D_objects_counter.java
src-plugins/3D_Objects_Counter/src/main/resources/plugins.config
src-plugins/3D_Viewer/.factorypath
src-plugins/3D_Viewer/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/3D_Viewer/CHANGES
src-plugins/3D_Viewer/createAPIDocs.sh
src-plugins/3D_Viewer/createJar.sh
src-plugins/3D_Viewer/customnode/TestDynamicLineMesh.py
src-plugins/3D_Viewer/pom.xml
src-plugins/3D_Viewer/src/main/java/ImageJ_3D_Viewer.java
src-plugins/3D_Viewer/src/main/java/customnode/Box.java
src-plugins/3D_Viewer/src/main/java/customnode/Cone.java
src-plugins/3D_Viewer/src/main/java/customnode/CustomIndexedTriangleMesh.java
src-plugins/3D_Viewer/src/main/java/customnode/CustomLineMesh.java
src-plugins/3D_Viewer/src/main/java/customnode/CustomMesh.java
src-plugins/3D_Viewer/src/main/java/customnode/CustomMeshNode.java
src-plugins/3D_Viewer/src/main/java/customnode/CustomMultiMesh.java
src-plugins/3D_Viewer/src/main/java/customnode/CustomPointMesh.java
src-plugins/3D_Viewer/src/main/java/customnode/CustomQuadMesh.java
src-plugins/3D_Viewer/src/main/java/customnode/CustomTransparentTriangleMesh.java
src-plugins/3D_Viewer/src/main/java/customnode/CustomTriangleMesh.java
src-plugins/3D_Viewer/src/main/java/customnode/EdgeContraction.java
src-plugins/3D_Viewer/src/main/java/customnode/FullInfoMesh.java
src-plugins/3D_Viewer/src/main/java/customnode/MeshLoader.java
src-plugins/3D_Viewer/src/main/java/customnode/MeshMaker.java
src-plugins/3D_Viewer/src/main/java/customnode/Mesh_Maker.java
src-plugins/3D_Viewer/src/main/java/customnode/Primitive.java
src-plugins/3D_Viewer/src/main/java/customnode/STLLoader.java
src-plugins/3D_Viewer/src/main/java/customnode/Sphere.java
src-plugins/3D_Viewer/src/main/java/customnode/Tube.java
src-plugins/3D_Viewer/src/main/java/customnode/WavefrontExporter.java
src-plugins/3D_Viewer/src/main/java/customnode/WavefrontLoader.java
src-plugins/3D_Viewer/src/main/java/customnode/u3d/BitStreamRead.java
src-plugins/3D_Viewer/src/main/java/customnode/u3d/BitStreamWrite.java
src-plugins/3D_Viewer/src/main/java/customnode/u3d/Constants.java
src-plugins/3D_Viewer/src/main/java/customnode/u3d/ContextManager.java
src-plugins/3D_Viewer/src/main/java/customnode/u3d/DataBlock.java
src-plugins/3D_Viewer/src/main/java/customnode/u3d/U3DExporter.java
src-plugins/3D_Viewer/src/main/java/ij3d/AxisConstants.java
src-plugins/3D_Viewer/src/main/java/ij3d/ColorTable.java
src-plugins/3D_Viewer/src/main/java/ij3d/Content.java
src-plugins/3D_Viewer/src/main/java/ij3d/ContentConstants.java
src-plugins/3D_Viewer/src/main/java/ij3d/ContentCreator.java
src-plugins/3D_Viewer/src/main/java/ij3d/ContentInstant.java
src-plugins/3D_Viewer/src/main/java/ij3d/ContentNode.java
src-plugins/3D_Viewer/src/main/java/ij3d/DefaultAnimatableUniverse.java
src-plugins/3D_Viewer/src/main/java/ij3d/DefaultUniverse.java
src-plugins/3D_Viewer/src/main/java/ij3d/Executer.java
src-plugins/3D_Viewer/src/main/java/ij3d/IJAdapter.java
src-plugins/3D_Viewer/src/main/java/ij3d/Image3DMenubar.java
src-plugins/3D_Viewer/src/main/java/ij3d/Image3DUniverse.java
src-plugins/3D_Viewer/src/main/java/ij3d/ImageCanvas3D.java
src-plugins/3D_Viewer/src/main/java/ij3d/ImageJ3DViewer.java
src-plugins/3D_Viewer/src/main/java/ij3d/ImageWindow3D.java
src-plugins/3D_Viewer/src/main/java/ij3d/ImgLibVolume.java
src-plugins/3D_Viewer/src/main/java/ij3d/Install_J3D.java
src-plugins/3D_Viewer/src/main/java/ij3d/MeshMaker.java
src-plugins/3D_Viewer/src/main/java/ij3d/Mesh_Maker.java
src-plugins/3D_Viewer/src/main/java/ij3d/NoopAdapter.java
src-plugins/3D_Viewer/src/main/java/ij3d/Pipe.java
src-plugins/3D_Viewer/src/main/java/ij3d/RegistrationMenubar.java
src-plugins/3D_Viewer/src/main/java/ij3d/SaveSession.java
src-plugins/3D_Viewer/src/main/java/ij3d/ScenegraphDebugger.java
src-plugins/3D_Viewer/src/main/java/ij3d/Test_Single_Voxel.java
src-plugins/3D_Viewer/src/main/java/ij3d/TimelapseListener.java
src-plugins/3D_Viewer/src/main/java/ij3d/UIAdapter.java
src-plugins/3D_Viewer/src/main/java/ij3d/UniverseListener.java
src-plugins/3D_Viewer/src/main/java/ij3d/UniverseSettings.java
src-plugins/3D_Viewer/src/main/java/ij3d/UniverseSynchronizer.java
src-plugins/3D_Viewer/src/main/java/ij3d/Utils.java
src-plugins/3D_Viewer/src/main/java/ij3d/Vector3.java
src-plugins/3D_Viewer/src/main/java/ij3d/VectorString3D.java
src-plugins/3D_Viewer/src/main/java/ij3d/ViewAdjuster.java
src-plugins/3D_Viewer/src/main/java/ij3d/Volume.java
src-plugins/3D_Viewer/src/main/java/ij3d/behaviors/BehaviorCallback.java
src-plugins/3D_Viewer/src/main/java/ij3d/behaviors/ContentTransformer.java
src-plugins/3D_Viewer/src/main/java/ij3d/behaviors/InteractiveBehavior.java
src-plugins/3D_Viewer/src/main/java/ij3d/behaviors/InteractiveViewPlatformTransformer.java
src-plugins/3D_Viewer/src/main/java/ij3d/behaviors/Picker.java
src-plugins/3D_Viewer/src/main/java/ij3d/behaviors/ViewPlatformTransformer.java
src-plugins/3D_Viewer/src/main/java/ij3d/behaviors/WaitForNextFrameBehavior.java
src-plugins/3D_Viewer/src/main/java/ij3d/contextmenu/ContextMenu.java
src-plugins/3D_Viewer/src/main/java/ij3d/gui/ContentCreatorDialog.java
src-plugins/3D_Viewer/src/main/java/ij3d/gui/InteractiveMeshDecimation.java
src-plugins/3D_Viewer/src/main/java/ij3d/gui/InteractiveTransformDialog.java
src-plugins/3D_Viewer/src/main/java/ij3d/gui/LUTDialog.java
src-plugins/3D_Viewer/src/main/java/ij3d/gui/PrimitiveDialogs.java
src-plugins/3D_Viewer/src/main/java/ij3d/pointlist/PointListDialog.java
src-plugins/3D_Viewer/src/main/java/ij3d/pointlist/PointListPanel.java
src-plugins/3D_Viewer/src/main/java/ij3d/pointlist/PointListShape.java
src-plugins/3D_Viewer/src/main/java/ij3d/shapes/BoundingBox.java
src-plugins/3D_Viewer/src/main/java/ij3d/shapes/BoundingSphere.java
src-plugins/3D_Viewer/src/main/java/ij3d/shapes/CoordinateSystem.java
src-plugins/3D_Viewer/src/main/java/ij3d/shapes/Scalebar.java
src-plugins/3D_Viewer/src/main/java/ij3d/shortcuts/ShortCutDialog.java
src-plugins/3D_Viewer/src/main/java/ij3d/shortcuts/ShortCutTable.java
src-plugins/3D_Viewer/src/main/java/ij3d/shortcuts/ShortCuts.java
src-plugins/3D_Viewer/src/main/java/isosurface/AmiraSurface.java
src-plugins/3D_Viewer/src/main/java/isosurface/MeshEditor.java
src-plugins/3D_Viewer/src/main/java/isosurface/MeshExporter.java
src-plugins/3D_Viewer/src/main/java/isosurface/MeshGroup.java
src-plugins/3D_Viewer/src/main/java/isosurface/MeshProperties.java
src-plugins/3D_Viewer/src/main/java/isosurface/Show_Colour_Surfaces.java
src-plugins/3D_Viewer/src/main/java/isosurface/SmoothControl.java
src-plugins/3D_Viewer/src/main/java/isosurface/Triangulator.java
src-plugins/3D_Viewer/src/main/java/marchingcubes/MCCube.java
src-plugins/3D_Viewer/src/main/java/marchingcubes/MCTriangulator.java
src-plugins/3D_Viewer/src/main/java/octree/AppearanceCreator.java
src-plugins/3D_Viewer/src/main/java/octree/Cube.java
src-plugins/3D_Viewer/src/main/java/octree/CubeData.java
src-plugins/3D_Viewer/src/main/java/octree/FilePreparer.java
src-plugins/3D_Viewer/src/main/java/octree/GeometryCreator.java
src-plugins/3D_Viewer/src/main/java/octree/OctreeDialog.java
src-plugins/3D_Viewer/src/main/java/octree/ShapeGroup.java
src-plugins/3D_Viewer/src/main/java/octree/VolumeOctree.java
src-plugins/3D_Viewer/src/main/java/orthoslice/MultiOrthoGroup.java
src-plugins/3D_Viewer/src/main/java/orthoslice/MultiOrthoslice.java
src-plugins/3D_Viewer/src/main/java/orthoslice/OrthoGroup.java
src-plugins/3D_Viewer/src/main/java/orthoslice/Orthoslice.java
src-plugins/3D_Viewer/src/main/java/process3d/Smooth_.java
src-plugins/3D_Viewer/src/main/java/surfaceplot/SurfacePlot.java
src-plugins/3D_Viewer/src/main/java/surfaceplot/SurfacePlotGroup.java
src-plugins/3D_Viewer/src/main/java/view4d/Timeline.java
src-plugins/3D_Viewer/src/main/java/view4d/TimelineGUI.java
src-plugins/3D_Viewer/src/main/java/voltex/AppearanceCreator.java
src-plugins/3D_Viewer/src/main/java/voltex/GeometryCreator.java
src-plugins/3D_Viewer/src/main/java/voltex/Mask.java
src-plugins/3D_Viewer/src/main/java/voltex/VoltexGroup.java
src-plugins/3D_Viewer/src/main/java/voltex/VoltexVolume.java
src-plugins/3D_Viewer/src/main/java/voltex/VolumeRenderer.java
src-plugins/3D_Viewer/src/main/javadoc/resources/customnode/package.html
src-plugins/3D_Viewer/src/main/resources/ij3d/TODO.txt
src-plugins/3D_Viewer/src/main/resources/plugins.config
src-plugins/3D_Viewer/src/main/resources/view4d/icons/bounceback.png
src-plugins/3D_Viewer/src/main/resources/view4d/icons/faster.png
src-plugins/3D_Viewer/src/main/resources/view4d/icons/first.png
src-plugins/3D_Viewer/src/main/resources/view4d/icons/last.png
src-plugins/3D_Viewer/src/main/resources/view4d/icons/next.png
src-plugins/3D_Viewer/src/main/resources/view4d/icons/nobounceback.png
src-plugins/3D_Viewer/src/main/resources/view4d/icons/pause.png
src-plugins/3D_Viewer/src/main/resources/view4d/icons/play.png
src-plugins/3D_Viewer/src/main/resources/view4d/icons/previous.png
src-plugins/3D_Viewer/src/main/resources/view4d/icons/record.png
src-plugins/3D_Viewer/src/main/resources/view4d/icons/slower.png
src-plugins/3D_Viewer/src/main/resources/view4d/icons/stop.png
src-plugins/Algorithm_Launcher/.factorypath
src-plugins/Algorithm_Launcher/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Algorithm_Launcher/plugin.jardesc
src-plugins/Algorithm_Launcher/pom.xml
src-plugins/Algorithm_Launcher/src/main/java/AlgorithmInfo.java
src-plugins/Algorithm_Launcher/src/main/java/AlgorithmLauncher.java
src-plugins/Algorithm_Launcher/src/main/java/AlgorithmParser.java
src-plugins/Algorithm_Launcher/src/main/resources/algorithms.config
src-plugins/Algorithm_Launcher/src/main/resources/plugins.config
src-plugins/AnalyzeSkeleton_/.factorypath
src-plugins/AnalyzeSkeleton_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/AnalyzeSkeleton_/pom.xml
src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java
src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Edge.java
src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Graph.java
src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Point.java
src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/SkeletonResult.java
src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Vertex.java
src-plugins/AnalyzeSkeleton_/src/main/resources/plugins.config
src-plugins/Analyze_Reader_Writer/.factorypath
src-plugins/Analyze_Reader_Writer/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Analyze_Reader_Writer/pom.xml
src-plugins/Analyze_Reader_Writer/src/main/java/Analyze_Reader.java
src-plugins/Analyze_Reader_Writer/src/main/java/Analyze_Writer.java
src-plugins/Analyze_Reader_Writer/src/main/resources/plugins.config
src-plugins/Anisotropic_Diffusion_2D/.factorypath
src-plugins/Anisotropic_Diffusion_2D/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Anisotropic_Diffusion_2D/pom.xml
src-plugins/Anisotropic_Diffusion_2D/src/main/java/anisotropic_diffusion/Anisotropic_Diffusion_2D.java
src-plugins/Anisotropic_Diffusion_2D/src/main/resources/plugins.config
src-plugins/Archipelago_Plugins/.factorypath
src-plugins/Archipelago_Plugins/pom.xml
src-plugins/Archipelago_Plugins/src/main/java/edu/utexas/archipelago/image/ImageBlockDeblock.java
src-plugins/Archipelago_Plugins/src/main/java/edu/utexas/archipelago/plugin/Batch_Weka_Segmentation.java
src-plugins/Archipelago_Plugins/src/main/java/edu/utexas/archipelago/segmentation/BatchWekaSegmentation.java
src-plugins/Archipelago_Plugins/src/main/resources/plugins.config
src-plugins/Arrow_/.factorypath
src-plugins/Arrow_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Arrow_/pom.xml
src-plugins/Arrow_/src/main/java/fiji/util/ArrowOptionPanel.java
src-plugins/Arrow_/src/main/java/fiji/util/ArrowShape.java
src-plugins/Arrow_/src/main/java/fiji/util/ArrowTool.java
src-plugins/Arrow_/src/main/resources/plugins.config
src-plugins/Auto_Threshold/.factorypath
src-plugins/Auto_Threshold/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Auto_Threshold/pom.xml
src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Local_Threshold.java
src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java
src-plugins/Auto_Threshold/src/main/resources/plugins.config
src-plugins/BalloonSegmentation_/.factorypath
src-plugins/BalloonSegmentation_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/BalloonSegmentation_/pom.xml
src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java
src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/Balloon.java
src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/BalloonPopulation.java
src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/BalloonSequence.java
src-plugins/BalloonSegmentation_/src/main/java/utils/CenterlineSlice.java
src-plugins/BalloonSegmentation_/src/main/java/utils/Kinematics.java
src-plugins/BalloonSegmentation_/src/main/java/utils/RandPermutation.java
src-plugins/BalloonSegmentation_/src/main/java/utils/Watershed.java
src-plugins/BalloonSegmentation_/src/main/resources/BalloonSegmentation.properties
src-plugins/BalloonSegmentation_/src/main/resources/plugins.config
src-plugins/BeanShell_Interpreter/.factorypath
src-plugins/BeanShell_Interpreter/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/BeanShell_Interpreter/pom.xml
src-plugins/BeanShell_Interpreter/src/main/java/BSH/BSH_Interpreter.java
src-plugins/BeanShell_Interpreter/src/main/java/BSH/Refresh_BSH_Scripts.java
src-plugins/BeanShell_Interpreter/src/main/resources/plugins.config
src-plugins/Bug_Submitter/.factorypath
src-plugins/Bug_Submitter/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Bug_Submitter/pom.xml
src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/Bug_Submitter.java
src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/NewBugDialog.java
src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/SubmissionResult.java
src-plugins/Bug_Submitter/src/main/resources/plugins.config
src-plugins/CLI_/.factorypath
src-plugins/CLI_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/CLI_/pom.xml
src-plugins/CLI_/src/main/java/CLI/CLI_.java
src-plugins/CLI_/src/main/java/CLI/CustomFileFilter.java
src-plugins/CLI_/src/main/java/CLI/ImageFileFilter.java
src-plugins/CLI_/src/main/java/CLI/MacroRecord.java
src-plugins/CLI_/src/main/java/CLI/OpenDirectory.java
src-plugins/CLI_/src/main/java/CLI/Refresh_Macros.java
src-plugins/CLI_/src/main/java/CLI/Screenshot.java
src-plugins/CLI_/src/main/java/CLI/Slide_Show.java
src-plugins/CLI_/src/main/java/CLI/TraceError.java
src-plugins/CLI_/src/main/resources/plugins.config
src-plugins/CPU_Meter/.factorypath
src-plugins/CPU_Meter/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/CPU_Meter/pom.xml
src-plugins/CPU_Meter/src/main/java/CPU_Meter.java
src-plugins/CPU_Meter/src/main/resources/plugins.config
src-plugins/Calculator_Plus/.factorypath
src-plugins/Calculator_Plus/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Calculator_Plus/pom.xml
src-plugins/Calculator_Plus/src/main/java/Calculator_Plus.java
src-plugins/Calculator_Plus/src/main/resources/plugins.config
src-plugins/Clojure_Interpreter/.factorypath
src-plugins/Clojure_Interpreter/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Clojure_Interpreter/pom.xml
src-plugins/Clojure_Interpreter/src/main/java/Clojure/Clojure_Interpreter.java
src-plugins/Clojure_Interpreter/src/main/java/Clojure/Refresh_Clojure_Scripts.java
src-plugins/Clojure_Interpreter/src/main/resources/plugins.config
src-plugins/Colocalisation_Analysis/.factorypath
src-plugins/Colocalisation_Analysis/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Colocalisation_Analysis/pom.xml
src-plugins/Colocalisation_Analysis/src/main/java/ColocImgLibGadgets.java
src-plugins/Colocalisation_Analysis/src/main/java/Coloc_2.java
src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java
src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java
src-plugins/Colocalisation_Analysis/src/main/java/algorithms/Accumulator.java
src-plugins/Colocalisation_Analysis/src/main/java/algorithms/Algorithm.java
src-plugins/Colocalisation_Analysis/src/main/java/algorithms/AutoThresholdRegression.java
src-plugins/Colocalisation_Analysis/src/main/java/algorithms/CostesSignificanceTest.java
src-plugins/Colocalisation_Analysis/src/main/java/algorithms/Histogram2D.java
src-plugins/Colocalisation_Analysis/src/main/java/algorithms/InputCheck.java
src-plugins/Colocalisation_Analysis/src/main/java/algorithms/LiHistogram2D.java
src-plugins/Colocalisation_Analysis/src/main/java/algorithms/LiICQ.java
src-plugins/Colocalisation_Analysis/src/main/java/algorithms/MandersColocalization.java
src-plugins/Colocalisation_Analysis/src/main/java/algorithms/MissingPreconditionException.java
src-plugins/Colocalisation_Analysis/src/main/java/algorithms/PearsonsCorrelation.java
src-plugins/Colocalisation_Analysis/src/main/java/algorithms/SpearmanRankCorrelation.java
src-plugins/Colocalisation_Analysis/src/main/java/gadgets/DataContainer.java
src-plugins/Colocalisation_Analysis/src/main/java/gadgets/MaskFactory.java
src-plugins/Colocalisation_Analysis/src/main/java/gadgets/Statistics.java
src-plugins/Colocalisation_Analysis/src/main/java/gadgets/ThresholdMode.java
src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/PredicateCursor.java
src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/TwinCursor.java
src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/algorithm/math/ImageStatistics.java
src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/predicate/MaskPredicate.java
src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/predicate/Predicate.java
src-plugins/Colocalisation_Analysis/src/main/java/results/EasyDisplay.java
src-plugins/Colocalisation_Analysis/src/main/java/results/NamedContainer.java
src-plugins/Colocalisation_Analysis/src/main/java/results/PDFWriter.java
src-plugins/Colocalisation_Analysis/src/main/java/results/ResultHandler.java
src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java
src-plugins/Colocalisation_Analysis/src/main/java/results/ValueResult.java
src-plugins/Colocalisation_Analysis/src/main/java/results/Warning.java
src-plugins/Colocalisation_Analysis/src/main/resources/plugins.config
src-plugins/Colocalisation_Analysis/src/test/java/tests/ColocalisationTest.java
src-plugins/Colocalisation_Analysis/src/test/java/tests/CostesSignificanceTest.java
src-plugins/Colocalisation_Analysis/src/test/java/tests/ImprovedNoise.java
src-plugins/Colocalisation_Analysis/src/test/java/tests/LiICQTest.java
src-plugins/Colocalisation_Analysis/src/test/java/tests/MandersColocalizationTest.java
src-plugins/Colocalisation_Analysis/src/test/java/tests/MaskAndRoiTest.java
src-plugins/Colocalisation_Analysis/src/test/java/tests/PearsonsCorrelationTest.java
src-plugins/Colocalisation_Analysis/src/test/java/tests/SpearmanRankTest.java
src-plugins/Colocalisation_Analysis/src/test/java/tests/StatisticsTest.java
src-plugins/Colocalisation_Analysis/src/test/java/tests/TestImageAccessor.java
src-plugins/Colocalisation_Analysis/tests/Data/SineXCosY.ijm
src-plugins/Colocalisation_Analysis/tests/Data/colocsample1b-green.tif
src-plugins/Colocalisation_Analysis/tests/Data/colocsample1b-red.tif
src-plugins/Colocalisation_Analysis/tests/Data/greenZstack.tif
src-plugins/Colocalisation_Analysis/tests/Data/high_random_overlap1.tif
src-plugins/Colocalisation_Analysis/tests/Data/high_random_overlap2.tif
src-plugins/Colocalisation_Analysis/tests/Data/mandersA.tiff
src-plugins/Colocalisation_Analysis/tests/Data/mandersB.tiff
src-plugins/Colocalisation_Analysis/tests/Data/mandersC.tiff
src-plugins/Colocalisation_Analysis/tests/Data/mandersD.tiff
src-plugins/Colocalisation_Analysis/tests/Data/mandersE.tiff
src-plugins/Colocalisation_Analysis/tests/Data/mandersF.tiff
src-plugins/Colocalisation_Analysis/tests/Data/mandersG.tiff
src-plugins/Colocalisation_Analysis/tests/Data/mandersH.tiff
src-plugins/Colocalisation_Analysis/tests/Data/mandersI.tiff
src-plugins/Colocalisation_Analysis/tests/Data/random-dots-smoothed.ijm
src-plugins/Colocalisation_Analysis/tests/Data/redZstack.tif
src-plugins/Colocalisation_Analysis/tests/Data/syntheticNegCh1.tif
src-plugins/Colocalisation_Analysis/tests/Data/syntheticNegCh2.tif
src-plugins/Color_Histogram/.factorypath
src-plugins/Color_Histogram/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Color_Histogram/pom.xml
src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java
src-plugins/Color_Histogram/src/main/resources/License.txt
src-plugins/Color_Histogram/src/main/resources/plugins.config
src-plugins/Color_Inspector_3D/.factorypath
src-plugins/Color_Inspector_3D/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Color_Inspector_3D/pom.xml
src-plugins/Color_Inspector_3D/src/main/java/ColorKLT.java
src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java
src-plugins/Color_Inspector_3D/src/main/java/KLT.java
src-plugins/Color_Inspector_3D/src/main/java/SymMat.java
src-plugins/Color_Inspector_3D/src/main/resources/images/baboon400.jpg
src-plugins/Color_Inspector_3D/src/main/resources/images/col65k.png
src-plugins/Color_Inspector_3D/src/main/resources/images/cube6.png
src-plugins/Color_Inspector_3D/src/main/resources/images/info.jpg
src-plugins/Color_Inspector_3D/src/main/resources/images/lilo.jpg
src-plugins/Color_Inspector_3D/src/main/resources/images/pool.jpg
src-plugins/Color_Inspector_3D/src/main/resources/images/sail.gif
src-plugins/Color_Inspector_3D/src/main/resources/images/titel.jpg
src-plugins/Color_Inspector_3D/src/main/resources/images/verlauf2.jpg
src-plugins/Color_Inspector_3D/src/main/resources/images/webcolors.gif
src-plugins/Color_Inspector_3D/src/main/resources/plugins.config
src-plugins/Colour_Deconvolution/.factorypath
src-plugins/Colour_Deconvolution/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Colour_Deconvolution/pom.xml
src-plugins/Colour_Deconvolution/src/main/java/Colour_Deconvolution.java
src-plugins/Colour_Deconvolution/src/main/resources/plugins.config
src-plugins/CorrectBleach_/.factorypath
src-plugins/CorrectBleach_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/CorrectBleach_/pom.xml
src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java
src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java
src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java
src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java
src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramMatcher.java
src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramPlot.java
src-plugins/CorrectBleach_/src/main/java/histogram2/PiecewiseLinearCdf.java
src-plugins/CorrectBleach_/src/main/java/histogram2/Util.java
src-plugins/CorrectBleach_/src/main/resources/plugins.config
src-plugins/Descriptor_based_registration/.factorypath
src-plugins/Descriptor_based_registration/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Descriptor_based_registration/pom.xml
src-plugins/Descriptor_based_registration/src/main/java/plugin/DescriptorParameters.java
src-plugins/Descriptor_based_registration/src/main/java/plugin/Descriptor_based_registration.java
src-plugins/Descriptor_based_registration/src/main/java/plugin/Descriptor_based_series_registration.java
src-plugins/Descriptor_based_registration/src/main/java/plugin/Manual_Landmark_Selection.java
src-plugins/Descriptor_based_registration/src/main/java/process/ComparePair.java
src-plugins/Descriptor_based_registration/src/main/java/process/Matching.java
src-plugins/Descriptor_based_registration/src/main/java/process/OverlayFusion.java
src-plugins/Descriptor_based_registration/src/main/java/process/Particle.java
src-plugins/Descriptor_based_registration/src/main/java/selection/DoneButtonListener.java
src-plugins/Descriptor_based_registration/src/main/java/selection/ExtendedPointMatch.java
src-plugins/Descriptor_based_registration/src/main/java/selection/ListListener.java
src-plugins/Descriptor_based_registration/src/main/java/selection/LoadListener.java
src-plugins/Descriptor_based_registration/src/main/java/selection/Match.java
src-plugins/Descriptor_based_registration/src/main/java/selection/RemoveItemListener.java
src-plugins/Descriptor_based_registration/src/main/java/selection/SaveListener.java
src-plugins/Descriptor_based_registration/src/main/java/selection/Select_Points.java
src-plugins/Descriptor_based_registration/src/main/resources/plugins.config
src-plugins/Dichromacy_/.factorypath
src-plugins/Dichromacy_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Dichromacy_/pom.xml
src-plugins/Dichromacy_/src/main/java/Dichromacy_.java
src-plugins/Dichromacy_/src/main/resources/plugins.config
src-plugins/Differentials_/.factorypath
src-plugins/Differentials_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Differentials_/pom.xml
src-plugins/Differentials_/src/main/java/Differentials_.java
src-plugins/Differentials_/src/main/resources/plugins.config
src-plugins/Directionality_/.factorypath
src-plugins/Directionality_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Directionality_/pom.xml
src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java
src-plugins/Directionality_/src/main/resources/plugins.config
src-plugins/Extended_Depth_Field/.factorypath
src-plugins/Extended_Depth_Field/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Extended_Depth_Field/pom.xml
src-plugins/Extended_Depth_Field/src/main/java/Demo.java
src-plugins/Extended_Depth_Field/src/main/java/EDF_Easy_.java
src-plugins/Extended_Depth_Field/src/main/java/EDF_Expert_.java
src-plugins/Extended_Depth_Field/src/main/java/EDF_Viewer3D_.java
src-plugins/Extended_Depth_Field/src/main/java/edf/AbstractEdfAlgorithm.java
src-plugins/Extended_Depth_Field/src/main/java/edf/Color2BW.java
src-plugins/Extended_Depth_Field/src/main/java/edf/EdfComplexWavelets.java
src-plugins/Extended_Depth_Field/src/main/java/edf/EdfRealWavelets.java
src-plugins/Extended_Depth_Field/src/main/java/edf/EdfSobel.java
src-plugins/Extended_Depth_Field/src/main/java/edf/EdfVariance.java
src-plugins/Extended_Depth_Field/src/main/java/edf/EdfWaveletMaximumModulus.java
src-plugins/Extended_Depth_Field/src/main/java/edf/LogSingleton.java
src-plugins/Extended_Depth_Field/src/main/java/edf/MorphologicalOperators.java
src-plugins/Extended_Depth_Field/src/main/java/edf/PostProcessing.java
src-plugins/Extended_Depth_Field/src/main/java/edf/ProcessTopology.java
src-plugins/Extended_Depth_Field/src/main/java/edf/Sobel.java
src-plugins/Extended_Depth_Field/src/main/java/edf/Tools.java
src-plugins/Extended_Depth_Field/src/main/java/edf/Variance.java
src-plugins/Extended_Depth_Field/src/main/java/edfgui/AboutDialog.java
src-plugins/Extended_Depth_Field/src/main/java/edfgui/AbstractDialog.java
src-plugins/Extended_Depth_Field/src/main/java/edfgui/AdvancedDialog.java
src-plugins/Extended_Depth_Field/src/main/java/edfgui/BasicDialog.java
src-plugins/Extended_Depth_Field/src/main/java/edfgui/ExtendedDepthOfField.java
src-plugins/Extended_Depth_Field/src/main/java/edfgui/LogPane.java
src-plugins/Extended_Depth_Field/src/main/java/edfgui/MySlider.java
src-plugins/Extended_Depth_Field/src/main/java/edfgui/MyTableRenderer.java
src-plugins/Extended_Depth_Field/src/main/java/edfgui/Parameters.java
src-plugins/Extended_Depth_Field/src/main/java/edfgui/SimpleTableModel.java
src-plugins/Extended_Depth_Field/src/main/java/edfgui/ThreadEdf.java
src-plugins/Extended_Depth_Field/src/main/java/edfgui/ThreadTopoProc.java
src-plugins/Extended_Depth_Field/src/main/java/surfacemap/SurfaceMap3D.java
src-plugins/Extended_Depth_Field/src/main/resources/plugins.config
src-plugins/FS_Align_TrakEM2/.factorypath
src-plugins/FS_Align_TrakEM2/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/FS_Align_TrakEM2/pom.xml
src-plugins/FS_Align_TrakEM2/src/main/java/fsalign/FSAlignListener.java
src-plugins/FS_Align_TrakEM2/src/main/java/fsalign/FS_Align_TrakEM2.java
src-plugins/FS_Align_TrakEM2/src/main/java/fsalign/FileListener.java
src-plugins/FS_Align_TrakEM2/src/main/java/fsalign/FolderWatcher.java
src-plugins/FS_Align_TrakEM2/src/main/java/fsalign/ImageListener.java
src-plugins/FS_Align_TrakEM2/src/main/resources/plugins.config
src-plugins/FeatureJ_/.factorypath
src-plugins/FeatureJ_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/FeatureJ_/pom.xml
src-plugins/FeatureJ_/src/main/java/FJ.java
src-plugins/FeatureJ_/src/main/java/FJ_About.java
src-plugins/FeatureJ_/src/main/java/FJ_Derivatives.java
src-plugins/FeatureJ_/src/main/java/FJ_Edges.java
src-plugins/FeatureJ_/src/main/java/FJ_Hessian.java
src-plugins/FeatureJ_/src/main/java/FJ_Laplacian.java
src-plugins/FeatureJ_/src/main/java/FJ_Options.java
src-plugins/FeatureJ_/src/main/java/FJ_Panel.java
src-plugins/FeatureJ_/src/main/java/FJ_Statistics.java
src-plugins/FeatureJ_/src/main/java/FJ_Structure.java
src-plugins/FeatureJ_/src/main/java/FJ_Website.java
src-plugins/FeatureJ_/src/main/resources/copyright.txt
src-plugins/FeatureJ_/src/main/resources/plugins.config
src-plugins/Feature_Detection/.factorypath
src-plugins/Feature_Detection/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Feature_Detection/pom.xml
src-plugins/Feature_Detection/src/main/java/fiji/features/Curvatures_.java
src-plugins/Feature_Detection/src/main/java/fiji/features/Frangi_.java
src-plugins/Feature_Detection/src/main/java/fiji/features/MultiTaskProgress.java
src-plugins/Feature_Detection/src/main/resources/plugins.config
src-plugins/Fiji_Archipelago/.factorypath
src-plugins/Fiji_Archipelago/pom.xml
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/Cluster.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/FijiArchipelago.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/Fiji_Archipelago.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/compute/ArchipelagoFuture.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/compute/ProcessManager.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/compute/QuickCallable.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/compute/QuickRunnable.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/compute/SerializableCallable.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/data/ClusterMessage.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/data/DataChunk.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/data/Duplex.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/data/FileChunk.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/data/HeartBeat.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/data/SimpleChunk.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/example/Cluster_SIFT.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/example/Equality_Example.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/example/Test_Cluster.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/exception/ShellExecutionException.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/ClusterStateListener.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/MessageListener.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/MessageType.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/NodeShellListener.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/NodeStateListener.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/ProcessListener.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/QueueListener.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/TransceiverExceptionListener.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/TransceiverListener.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/MessageXC.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/client/ArchipelagoClient.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/node/ClusterNode.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/node/ClusterNodeState.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/node/NodeManager.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/server/ArchipelagoServer.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/shell/NodeShell.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/shell/NodeShellParameters.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/shell/SSHNodeShell.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/shell/SocketNodeShell.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/shell/ssh/JSchUtility.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/shell/ssh/NodeShellUserInfo.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/ui/ArchipelagoUI.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/ui/ClusterNodeStatusUI.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/ui/ClusterUI.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/ui/ClusterXML.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/ui/NodeConfigurationUI.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/ui/RootNodeConfigDialog.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/EasyLogger.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/IJLogger.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/IJPopupLogger.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/InputStreamLogger.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/NullLogger.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/PrintStreamLogger.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/ProcessManagerCoreComparator.java
src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/XCErrorAdapter.java
src-plugins/Fiji_Archipelago/src/main/resources/plugins.config
src-plugins/Fiji_Developer/.factorypath
src-plugins/Fiji_Developer/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Fiji_Developer/pom.xml
src-plugins/Fiji_Developer/src/main/java/fiji/GraphicalMediaWikiClient.java
src-plugins/Fiji_Developer/src/main/java/fiji/MediaWikiClient.java
src-plugins/Fiji_Developer/src/main/java/fiji/Prettify_Wiki_Screenshot.java
src-plugins/Fiji_Developer/src/main/java/fiji/Upload_Image_To_Wiki.java
src-plugins/Fiji_Developer/src/main/java/fiji/Wiki_Editor.java
src-plugins/Fiji_Developer/src/main/resources/plugins.config
src-plugins/Fiji_Package_Maker/.factorypath
src-plugins/Fiji_Package_Maker/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Fiji_Package_Maker/pom.xml
src-plugins/Fiji_Package_Maker/src/main/java/fiji/packaging/Package_Maker.java
src-plugins/Fiji_Package_Maker/src/main/java/fiji/packaging/Packager.java
src-plugins/Fiji_Package_Maker/src/main/java/fiji/packaging/TarBz2Packager.java
src-plugins/Fiji_Package_Maker/src/main/java/fiji/packaging/TarGzPackager.java
src-plugins/Fiji_Package_Maker/src/main/java/fiji/packaging/TarPackager.java
src-plugins/Fiji_Package_Maker/src/main/java/fiji/packaging/ZipPackager.java
src-plugins/Fiji_Package_Maker/src/main/resources/plugins.config
src-plugins/Fiji_Plugins/.factorypath
src-plugins/Fiji_Plugins/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Fiji_Plugins/build.xml
src-plugins/Fiji_Plugins/pom.xml
src-plugins/Fiji_Plugins/src/main/java/Retinex_.java
src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta.java
src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta_Clipboard.java
src-plugins/Fiji_Plugins/src/main/java/fiji/denoise/ROF_Denoise.java
src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Linear_Gradient.java
src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Radial_Gradient.java
src-plugins/Fiji_Plugins/src/main/java/fiji/geom/AreaCalculations.java
src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java
src-plugins/Fiji_Plugins/src/main/java/fiji/help/Context_Help.java
src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/EDT.java
src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/SEDT.java
src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Binary_to_Point_Selection.java
src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Rounded_Rectangle.java
src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Select_Bounding_Box.java
src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/CompositeConverter2.java
src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java
src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Hyperstack_rearranger.java
src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Radial_Reslice.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/Circle_Fitter.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/CurrentSlice.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/DistanceComparator.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/Fiji_Uploader.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/KDTree.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/NNearestNeighborSearch.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/NearestNeighborSearch.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/RadiusNeighborSearch.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/Recent_Commands.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/RedirectErrAndOut.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/TestKDTree.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Leaf.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Node.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/NonLeaf.java
src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/SimpleNode.java
src-plugins/Fiji_Plugins/src/main/resources/plugins.config
src-plugins/Fiji_Plugins/test/Script_dynamic_reslice.py
src-plugins/Fiji_Updater/.factorypath
src-plugins/Fiji_Updater/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Fiji_Updater/fiji/updater/TODO
src-plugins/Fiji_Updater/pom.xml
src-plugins/Fiji_Updater/src/main/java/fiji/updater/Adapter.java
src-plugins/Fiji_Updater/src/main/java/fiji/updater/Bootstrap.java
src-plugins/Fiji_Updater/src/main/java/fiji/updater/ImageJ1UI.java
src-plugins/Fiji_Updater/src/main/java/fiji/updater/Main.java
src-plugins/Fiji_Updater/src/main/java/fiji/updater/StderrUI.java
src-plugins/Fiji_Updater/src/main/java/fiji/updater/UI.java
src-plugins/Fiji_Updater/src/main/java/fiji/updater/Updater.java
src-plugins/Fiji_Updater/src/main/java/fiji/updater/UptodateCheck.java
src-plugins/Fiji_Updater/src/main/resources/plugins.config
src-plugins/FlowJ_/.factorypath
src-plugins/FlowJ_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/FlowJ_/pom.xml
src-plugins/FlowJ_/src/main/java/FlowJ/Demodulation.java
src-plugins/FlowJ_/src/main/java/FlowJ/Flow3JColorNoiseMapper.java
src-plugins/FlowJ_/src/main/java/FlowJ/Flow3JDynamicColorMapper.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJColorNoiseMapper.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJDisplay.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJDynamicColor.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJDynamicColorMapper.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJError.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJException.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJFleet.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJFlow.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJLucas.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJMapper.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJQuiverMapper.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJSingh.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJSpotNoise.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJSpotNoiseMapper.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJUras.java
src-plugins/FlowJ_/src/main/java/FlowJ/FlowJUserInterface.java
src-plugins/FlowJ_/src/main/java/FlowJ/SSD.java
src-plugins/FlowJ_/src/main/java/FlowJ_.java
src-plugins/FlowJ_/src/main/java/SurfaceJ_.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJAlphaColor.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJBackprojection.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJBinaryShell.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJCell.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifier.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifierGradientCT.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifierInteger.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifierIsosurface.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifierIsosurfaceGrayscale.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifierLNoIndex.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifierLNotIndex0.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifierLevoy.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifierLevoyCueing.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifierLinear.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifierRGB.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifierValue.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJClassifiers.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJCutout.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJGradient.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJInterpolator.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJIsosurfaceRender.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJLight.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJMatrix.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJNearestNeighbor.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJOutlineShader.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJPhongShader.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJPlane.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJProjection.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJReconstructor.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJRender.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJRenderView.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJRenderViewCine.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJRenderViewInteractive.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJRenderViewSingle.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJRenderViewStereo.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJRenderer.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJShade.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJShader.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJShape.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJSplineInterpolator.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJSurfaceJ.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJSurfacePlotShell.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJThresholdedVolume.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJTrilinear.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJUserInterface.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJValue.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJValueHSB.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJViewerCanvas.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJViewspaceRender.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJViewspaceUtil.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJVoxelLoc.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJZBuffer.java
src-plugins/FlowJ_/src/main/java/VolumeJ/VJrgbValue.java
src-plugins/FlowJ_/src/main/java/VolumeJ_.java
src-plugins/FlowJ_/src/main/java/Volume_Reconstructor_.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJJacobi.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJShortMatrix.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJfft.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJfht.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJfit.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJfunctions.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJgifa.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJknn.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJmatrix.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJmi.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJpca.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJpowell.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJstats.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJtransform.java
src-plugins/FlowJ_/src/main/java/bijnum/BIJutil.java
src-plugins/FlowJ_/src/main/java/bijnum/Blas.java
src-plugins/FlowJ_/src/main/java/bijnum/Jacobi.java
src-plugins/FlowJ_/src/main/java/bijnum/SVDC.java
src-plugins/FlowJ_/src/main/java/bijnum/SVDCException.java
src-plugins/FlowJ_/src/main/java/volume/Beaudetx.java
src-plugins/FlowJ_/src/main/java/volume/CentralDiff.java
src-plugins/FlowJ_/src/main/java/volume/Convolver.java
src-plugins/FlowJ_/src/main/java/volume/Diffusion.java
src-plugins/FlowJ_/src/main/java/volume/Diffusion3D.java
src-plugins/FlowJ_/src/main/java/volume/DoG.java
src-plugins/FlowJ_/src/main/java/volume/DoG2D.java
src-plugins/FlowJ_/src/main/java/volume/DoG3D.java
src-plugins/FlowJ_/src/main/java/volume/Equalize.java
src-plugins/FlowJ_/src/main/java/volume/GaborCos.java
src-plugins/FlowJ_/src/main/java/volume/GaborSin.java
src-plugins/FlowJ_/src/main/java/volume/Gaussian.java
src-plugins/FlowJ_/src/main/java/volume/Gaussian2D.java
src-plugins/FlowJ_/src/main/java/volume/Gaussian3D.java
src-plugins/FlowJ_/src/main/java/volume/GaussianDerivative.java
src-plugins/FlowJ_/src/main/java/volume/Hessian.java
src-plugins/FlowJ_/src/main/java/volume/HyperVolume.java
src-plugins/FlowJ_/src/main/java/volume/Kernel.java
src-plugins/FlowJ_/src/main/java/volume/Kernel1D.java
src-plugins/FlowJ_/src/main/java/volume/Kernel2D.java
src-plugins/FlowJ_/src/main/java/volume/Kernel3D.java
src-plugins/FlowJ_/src/main/java/volume/Kernel4D.java
src-plugins/FlowJ_/src/main/java/volume/LoG.java
src-plugins/FlowJ_/src/main/java/volume/Sobel.java
src-plugins/FlowJ_/src/main/java/volume/Sobel3D.java
src-plugins/FlowJ_/src/main/java/volume/Sobel4D.java
src-plugins/FlowJ_/src/main/java/volume/Transformer.java
src-plugins/FlowJ_/src/main/java/volume/Volume.java
src-plugins/FlowJ_/src/main/java/volume/VolumeFloat.java
src-plugins/FlowJ_/src/main/java/volume/VolumeIO.java
src-plugins/FlowJ_/src/main/java/volume/VolumeInteger.java
src-plugins/FlowJ_/src/main/java/volume/VolumeRGB.java
src-plugins/FlowJ_/src/main/java/volume/VolumeShort.java
src-plugins/FlowJ_/src/main/resources/plugins.config
src-plugins/Graph_Cut/.factorypath
src-plugins/Graph_Cut/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Graph_Cut/pom.xml
src-plugins/Graph_Cut/src/main/java/graphcut/Graph.java
src-plugins/Graph_Cut/src/main/java/graphcut/GraphCut.java
src-plugins/Graph_Cut/src/main/java/graphcut/Graph_Cut.java
src-plugins/Graph_Cut/src/main/java/graphcut/ImageOverlay.java
src-plugins/Graph_Cut/src/main/resources/plugins.config
src-plugins/Gray_Morphology/.factorypath
src-plugins/Gray_Morphology/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Gray_Morphology/pom.xml
src-plugins/Gray_Morphology/src/main/java/GrayMorphology_.java
src-plugins/Gray_Morphology/src/main/java/mmorpho/Constants.java
src-plugins/Gray_Morphology/src/main/java/mmorpho/LocalHistogram.java
src-plugins/Gray_Morphology/src/main/java/mmorpho/MorphoProcessor.java
src-plugins/Gray_Morphology/src/main/java/mmorpho/StructureElement.java
src-plugins/Gray_Morphology/src/main/resources/License.txt
src-plugins/Gray_Morphology/src/main/resources/plugins.config
src-plugins/Helmholtz_Analysis/.factorypath
src-plugins/Helmholtz_Analysis/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Helmholtz_Analysis/pom.xml
src-plugins/Helmholtz_Analysis/src/main/java/Helmholtz_Analysis.java
src-plugins/Helmholtz_Analysis/src/main/resources/plugins.config
src-plugins/IJ_Robot/.factorypath
src-plugins/IJ_Robot/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/IJ_Robot/pom.xml
src-plugins/IJ_Robot/src/main/java/IJ_Robot.java
src-plugins/IJ_Robot/src/main/resources/IJRobotDemo.txt
src-plugins/IJ_Robot/src/main/resources/plugins.config
src-plugins/IO_/.factorypath
src-plugins/IO_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/IO_/image4j-core-0.7/build.xml
src-plugins/IO_/io/df3_scene.pov
src-plugins/IO_/pom.xml
src-plugins/IO_/src/main/java/HandleExtraFileTypes.java
src-plugins/IO_/src/main/java/iconsupport/icns/IOSupport.java
src-plugins/IO_/src/main/java/iconsupport/icns/IcnsCodec.java
src-plugins/IO_/src/main/java/iconsupport/icns/IconSuite.java
src-plugins/IO_/src/main/java/iconsupport/icns/RunLengthEncoding.java
src-plugins/IO_/src/main/java/io/Animated_Gif_Reader.java
src-plugins/IO_/src/main/java/io/DM3_Reader.java
src-plugins/IO_/src/main/java/io/Export_EPS.java
src-plugins/IO_/src/main/java/io/Extract_Images_From_PDF.java
src-plugins/IO_/src/main/java/io/FIBSEM_Reader.java
src-plugins/IO_/src/main/java/io/FlexibleFileOpener.java
src-plugins/IO_/src/main/java/io/Gif_Stack_Writer.java
src-plugins/IO_/src/main/java/io/ICO_Reader.java
src-plugins/IO_/src/main/java/io/ICO_Writer.java
src-plugins/IO_/src/main/java/io/IPLab_Reader.java
src-plugins/IO_/src/main/java/io/Icns_Reader.java
src-plugins/IO_/src/main/java/io/Icns_Writer.java
src-plugins/IO_/src/main/java/io/LSS16_Reader.java
src-plugins/IO_/src/main/java/io/LSS16_Writer.java
src-plugins/IO_/src/main/java/io/Nrrd_Reader.java
src-plugins/IO_/src/main/java/io/Nrrd_Writer.java
src-plugins/IO_/src/main/java/io/Open_DAT_EMMENU.java
src-plugins/IO_/src/main/java/io/Open_DF3.java
src-plugins/IO_/src/main/java/io/Open_MRC_Leginon.java
src-plugins/IO_/src/main/java/io/PDF_Viewer.java
src-plugins/IO_/src/main/java/io/PDF_Writer.java
src-plugins/IO_/src/main/java/io/SVG_Reader.java
src-plugins/IO_/src/main/java/io/Save_DF3.java
src-plugins/IO_/src/main/java/io/TorstenRaw_GZ_Reader.java
src-plugins/IO_/src/main/java/io/XPM_Writer.java
src-plugins/IO_/src/main/java/net/sf/image4j/codec/bmp/BMPConstants.java
src-plugins/IO_/src/main/java/net/sf/image4j/codec/bmp/BMPDecoder.java
src-plugins/IO_/src/main/java/net/sf/image4j/codec/bmp/BMPEncoder.java
src-plugins/IO_/src/main/java/net/sf/image4j/codec/bmp/BMPImage.java
src-plugins/IO_/src/main/java/net/sf/image4j/codec/bmp/ColorEntry.java
src-plugins/IO_/src/main/java/net/sf/image4j/codec/bmp/InfoHeader.java
src-plugins/IO_/src/main/java/net/sf/image4j/codec/ico/ICOConstants.java
src-plugins/IO_/src/main/java/net/sf/image4j/codec/ico/ICODecoder.java
src-plugins/IO_/src/main/java/net/sf/image4j/codec/ico/ICOEncoder.java
src-plugins/IO_/src/main/java/net/sf/image4j/codec/ico/ICOImage.java
src-plugins/IO_/src/main/java/net/sf/image4j/codec/ico/IconEntry.java
src-plugins/IO_/src/main/java/net/sf/image4j/io/EndianUtils.java
src-plugins/IO_/src/main/java/net/sf/image4j/io/LittleEndianInputStream.java
src-plugins/IO_/src/main/java/net/sf/image4j/io/LittleEndianOutputStream.java
src-plugins/IO_/src/main/java/net/sf/image4j/io/LittleEndianRandomAccessFile.java
src-plugins/IO_/src/main/java/net/sf/image4j/util/ConvertUtil.java
src-plugins/IO_/src/main/java/net/sf/image4j/util/ImageUtil.java
src-plugins/IO_/src/main/javadoc/resources/image4j-core-0.7/overview.html
src-plugins/IO_/src/main/javadoc/resources/net/sf/image4j/codec/bmp/package.html
src-plugins/IO_/src/main/javadoc/resources/net/sf/image4j/codec/ico/package.html
src-plugins/IO_/src/main/javadoc/resources/net/sf/image4j/codec/package.html
src-plugins/IO_/src/main/javadoc/resources/net/sf/image4j/io/package.html
src-plugins/IO_/src/main/javadoc/resources/net/sf/image4j/util/package.html
src-plugins/IO_/src/main/resources/image4j-core-0.7/LICENSE.TXT
src-plugins/IO_/src/main/resources/plugins.config
src-plugins/Image_Expression_Parser/.factorypath
src-plugins/Image_Expression_Parser/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Image_Expression_Parser/pom.xml
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/ImgLibNumberFactory.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/ImgLibOperatorSet.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/ImgLibParser.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/ImgLibUtils.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibAbs.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibAdd.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibArcCosine.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibArcSine.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibArcTangent.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibArcTangent2.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibBandPassFilter.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibCeil.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibComparison.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibCosine.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibDithering.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibDivide.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibExp.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibFloor.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibFunction.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibGaussConv.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibLog.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibLogical.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibModulus.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibMultiply.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibNormalize.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibPower.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibRound.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibSine.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibSquareRoot.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibSubtract.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibTangent.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/ImgLibUMinus.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/SingleOperandAbstractFunction.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/SingleOperandPixelBasedAbstractFunction.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/TwoOperandsAbstractFunction.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/expressionparser/function/TwoOperandsPixelBasedAbstractFunction.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/process/IepGui.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/process/Image_Expression_Parser.java
src-plugins/Image_Expression_Parser/src/main/java/fiji/process/Test_JEP.java
src-plugins/Image_Expression_Parser/src/main/resources/plugins.config
src-plugins/Image_Expression_Parser/src/test/java/fiji/expressionparser/test/TestImgLibAlgorithms.java
src-plugins/Image_Expression_Parser/src/test/java/fiji/expressionparser/test/TestSingleOperandPixelBasedFunctions.java
src-plugins/Image_Expression_Parser/src/test/java/fiji/expressionparser/test/TestSingleOperandPixelBasedOperators.java
src-plugins/Image_Expression_Parser/src/test/java/fiji/expressionparser/test/TestTwoOperandsPixelBasedFunctions.java
src-plugins/Image_Expression_Parser/src/test/java/fiji/expressionparser/test/TestTwoOperandsPixelBasedOperators.java
src-plugins/Image_Expression_Parser/src/test/java/fiji/expressionparser/test/TestUtilities.java
src-plugins/Interactive_3D_Surface_Plot/.factorypath
src-plugins/Interactive_3D_Surface_Plot/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Interactive_3D_Surface_Plot/pom.xml
src-plugins/Interactive_3D_Surface_Plot/src/main/java/Interactive_3D_Surface_Plot.java
src-plugins/Interactive_3D_Surface_Plot/src/main/java/jRenderer3D/JRenderer3D.java
src-plugins/Interactive_3D_Surface_Plot/src/main/java/jRenderer3D/Line3D.java
src-plugins/Interactive_3D_Surface_Plot/src/main/java/jRenderer3D/Lut.java
src-plugins/Interactive_3D_Surface_Plot/src/main/java/jRenderer3D/Misc.java
src-plugins/Interactive_3D_Surface_Plot/src/main/java/jRenderer3D/Point3D.java
src-plugins/Interactive_3D_Surface_Plot/src/main/java/jRenderer3D/PointsPlot.java
src-plugins/Interactive_3D_Surface_Plot/src/main/java/jRenderer3D/SurfacePlot.java
src-plugins/Interactive_3D_Surface_Plot/src/main/java/jRenderer3D/SurfacePlotData.java
src-plugins/Interactive_3D_Surface_Plot/src/main/java/jRenderer3D/Text3D.java
src-plugins/Interactive_3D_Surface_Plot/src/main/java/jRenderer3D/Transform.java
src-plugins/Interactive_3D_Surface_Plot/src/main/java/jRenderer3D/Volume.java
src-plugins/Interactive_3D_Surface_Plot/src/main/resources/plugins.config
src-plugins/IsoData_Classifier/.factorypath
src-plugins/IsoData_Classifier/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/IsoData_Classifier/pom.xml
src-plugins/IsoData_Classifier/src/main/java/IsoData_Classifier.java
src-plugins/IsoData_Classifier/src/main/resources/plugins.config
src-plugins/JRuby_Interpreter/.factorypath
src-plugins/JRuby_Interpreter/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/JRuby_Interpreter/pom.xml
src-plugins/JRuby_Interpreter/src/main/java/JRuby/JRuby_Interpreter.java
src-plugins/JRuby_Interpreter/src/main/java/JRuby/Refresh_JRuby_Scripts.java
src-plugins/JRuby_Interpreter/src/main/resources/plugins.config
src-plugins/Jama/.factorypath
src-plugins/Jama/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Jama/ChangeLog
src-plugins/Jama/pom.xml
src-plugins/Jama/src/main/java/Jama/CholeskyDecomposition.java
src-plugins/Jama/src/main/java/Jama/EigenvalueDecomposition.java
src-plugins/Jama/src/main/java/Jama/LUDecomposition.java
src-plugins/Jama/src/main/java/Jama/Matrix.java
src-plugins/Jama/src/main/java/Jama/QRDecomposition.java
src-plugins/Jama/src/main/java/Jama/SingularValueDecomposition.java
src-plugins/Jama/src/main/java/Jama/examples/MagicSquareExample.java
src-plugins/Jama/src/main/java/Jama/test/TestMatrix.java
src-plugins/Jama/src/main/java/Jama/util/Maths.java
src-plugins/Javascript_/.factorypath
src-plugins/Javascript_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Javascript_/pom.xml
src-plugins/Javascript_/src/main/java/Javascript/Javascript_Interpreter.java
src-plugins/Javascript_/src/main/java/Javascript/Refresh_Javascript_Scripts.java
src-plugins/Javascript_/src/main/resources/plugins.config
src-plugins/Jython_Interpreter/.factorypath
src-plugins/Jython_Interpreter/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Jython_Interpreter/pom.xml
src-plugins/Jython_Interpreter/src/main/java/Jython/Jython_Interpreter.java
src-plugins/Jython_Interpreter/src/main/java/Jython/Refresh_Jython_Scripts.java
src-plugins/Jython_Interpreter/src/main/resources/plugins.config
src-plugins/Kuwahara_Filter/.factorypath
src-plugins/Kuwahara_Filter/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Kuwahara_Filter/pom.xml
src-plugins/Kuwahara_Filter/src/main/java/Kuwahara_Filter.java
src-plugins/Kuwahara_Filter/src/main/resources/plugins.config
src-plugins/Lasso_and_Blow_Tool/.factorypath
src-plugins/Lasso_and_Blow_Tool/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Lasso_and_Blow_Tool/pom.xml
src-plugins/Lasso_and_Blow_Tool/src/main/java/plugin/Lasso.java
src-plugins/Lasso_and_Blow_Tool/src/main/java/plugin/Lasso_.java
src-plugins/Lasso_and_Blow_Tool/src/main/java/util/FibonacciHeap.java
src-plugins/Lasso_and_Blow_Tool/src/main/java/util/FibonacciHeapDouble.java
src-plugins/Lasso_and_Blow_Tool/src/main/java/util/FibonacciHeapInt.java
src-plugins/Lasso_and_Blow_Tool/src/main/resources/plugins.config
src-plugins/Linear_Kuwahara/.factorypath
src-plugins/Linear_Kuwahara/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Linear_Kuwahara/pom.xml
src-plugins/Linear_Kuwahara/src/main/java/Kuwahara_LinearStructure_Filter_v3.java
src-plugins/Linear_Kuwahara/src/main/resources/plugins.config
src-plugins/LocalThickness_/.factorypath
src-plugins/LocalThickness_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/LocalThickness_/pom.xml
src-plugins/LocalThickness_/src/main/java/Clean_Up_Local_Thickness.java
src-plugins/LocalThickness_/src/main/java/Distance_Ridge.java
src-plugins/LocalThickness_/src/main/java/EDT_S1D.java
src-plugins/LocalThickness_/src/main/java/Local_Thickness_Driver.java
src-plugins/LocalThickness_/src/main/java/Local_Thickness_Parallel.java
src-plugins/LocalThickness_/src/main/resources/plugins.config
src-plugins/MTrack2_/.factorypath
src-plugins/MTrack2_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/MTrack2_/pom.xml
src-plugins/MTrack2_/src/main/java/MTrack2_.java
src-plugins/MTrack2_/src/main/resources/plugins.config
src-plugins/MTrackJ_/pom.xml
src-plugins/MTrackJ_/src/main/java/MTJGenial.java
src-plugins/MTrackJ_/src/main/java/MTJMessage.java
src-plugins/MTrackJ_/src/main/java/MTJQuestion.java
src-plugins/MTrackJ_/src/main/java/MTrackJ_.java
src-plugins/MTrackJ_/src/main/java/MTrackJ_Website.java
src-plugins/MTrackJ_/src/main/resources/copyright.txt
src-plugins/MTrackJ_/src/main/resources/plugins.config
src-plugins/M_I_P/.factorypath
src-plugins/M_I_P/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/M_I_P/pom.xml
src-plugins/M_I_P/src/main/java/MultipleImageProcessor.java
src-plugins/M_I_P/src/main/resources/plugins.config
src-plugins/Manual_Tracking/.factorypath
src-plugins/Manual_Tracking/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Manual_Tracking/pom.xml
src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java
src-plugins/Manual_Tracking/src/main/java/adapter/Image5DAdapter.java
src-plugins/Manual_Tracking/src/main/java/adapter/ImageAdapter.java
src-plugins/Manual_Tracking/src/main/resources/plugins.config
src-plugins/MosaicJ_/.factorypath
src-plugins/MosaicJ_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/MosaicJ_/pom.xml
src-plugins/MosaicJ_/src/main/java/MosaicJ_.java
src-plugins/MosaicJ_/src/main/resources/plugins.config
src-plugins/Multi_Kymograph/.factorypath
src-plugins/Multi_Kymograph/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Multi_Kymograph/pom.xml
src-plugins/Multi_Kymograph/src/main/java/MultipleKymograph_.java
src-plugins/Multi_Kymograph/src/main/java/MultipleOverlay_.java
src-plugins/Multi_Kymograph/src/main/java/StackDifference_.java
src-plugins/Multi_Kymograph/src/main/java/WalkingAverage_.java
src-plugins/Multi_Kymograph/src/main/resources/plugins.config
src-plugins/Non_Modal_Test/NonblockingGenericDialog.java
src-plugins/Non_Modal_Test/Test_Dialog.java
src-plugins/PIV_analyser/.factorypath
src-plugins/PIV_analyser/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/PIV_analyser/pom.xml
src-plugins/PIV_analyser/src/main/java/DateUtils.java
src-plugins/PIV_analyser/src/main/java/PIVAnalyserTestDrive.java
src-plugins/PIV_analyser/src/main/java/PIV_analyser.java
src-plugins/PIV_analyser/src/main/java/Stopwatch.java
src-plugins/PIV_analyser/src/main/resources/plugins.config
src-plugins/PointPicker_/.factorypath
src-plugins/PointPicker_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/PointPicker_/pom.xml
src-plugins/PointPicker_/src/main/java/PointPicker_.java
src-plugins/PointPicker_/src/main/resources/plugins.config
src-plugins/QuickPALM_/.factorypath
src-plugins/QuickPALM_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/QuickPALM_/pom.xml
src-plugins/QuickPALM_/src/main/java/QuickPALM/Analyse_Particles.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/Correct_Drift.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/Correct_Drift2.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/Create_3D_calibration.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/Load_particles_tableFromImg.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/MyDialogs.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/MyFunctions.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/MyIO.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/ParticleSaver.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/Reconstruct_Dataset.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/ReconstructionViewer.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/Run_MyMacro.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/Save_particles_table2img.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/Stop_processing.java
src-plugins/QuickPALM_/src/main/java/QuickPALM/package-info.java
src-plugins/QuickPALM_/src/main/resources/QuickPALM/About_.txt
src-plugins/QuickPALM_/src/main/resources/QuickPALM/Correct_Drift_NoBeads.txt
src-plugins/QuickPALM_/src/main/resources/QuickPALM/Fast_VirtualStack_Opener.txt
src-plugins/QuickPALM_/src/main/resources/QuickPALM/Sort_particles.txt
src-plugins/QuickPALM_/src/main/resources/QuickPALM/Update_.txt
src-plugins/QuickPALM_/src/main/resources/plugins.config
src-plugins/RATS_/.factorypath
src-plugins/RATS_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/RATS_/pom.xml
src-plugins/RATS_/src/main/java/About_RATS.java
src-plugins/RATS_/src/main/java/RATSQuadtree.java
src-plugins/RATS_/src/main/java/RATS_.java
src-plugins/RATS_/src/main/resources/plugins.config
src-plugins/RandomJ_/.factorypath
src-plugins/RandomJ_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/RandomJ_/pom.xml
src-plugins/RandomJ_/src/main/java/RJ.java
src-plugins/RandomJ_/src/main/java/RJ_About.java
src-plugins/RandomJ_/src/main/java/RJ_Binomial.java
src-plugins/RandomJ_/src/main/java/RJ_Exponential.java
src-plugins/RandomJ_/src/main/java/RJ_Gamma.java
src-plugins/RandomJ_/src/main/java/RJ_Gaussian.java
src-plugins/RandomJ_/src/main/java/RJ_Options.java
src-plugins/RandomJ_/src/main/java/RJ_Panel.java
src-plugins/RandomJ_/src/main/java/RJ_Poisson.java
src-plugins/RandomJ_/src/main/java/RJ_Uniform.java
src-plugins/RandomJ_/src/main/java/RJ_Website.java
src-plugins/RandomJ_/src/main/resources/copyright.txt
src-plugins/RandomJ_/src/main/resources/plugins.config
src-plugins/Reconstruct_Reader/.factorypath
src-plugins/Reconstruct_Reader/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Reconstruct_Reader/pom.xml
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/crop/AreaList_Crop.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/Utils.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/reconstruct/ContourSet.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/reconstruct/ReconstructAreaList.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/reconstruct/ReconstructProfile.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/reconstruct/ReconstructProfileList.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/reconstruct/ReconstructSection.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/reconstruct/ReconstructTranslator.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/reconstruct/ReconstructZTrace.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/reconstruct/Reconstruct_Reader.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/trakem2/DefaultTemplate.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/trakem2/FileTemplate.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/trakem2/Reconstruct_Writer.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/trakem2/SeriesTemplate.java
src-plugins/Reconstruct_Reader/src/main/java/edu/utexas/clm/reconstructreader/trakem2/Trakem2Translator.java
src-plugins/Reconstruct_Reader/src/main/resources/CLM.trakem2
src-plugins/Reconstruct_Reader/src/main/resources/plugins.config
src-plugins/Refresh_Javas/.factorypath
src-plugins/Refresh_Javas/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Refresh_Javas/pom.xml
src-plugins/Refresh_Javas/src/main/java/fiji/scripting/java/PlugInExecutor.java
src-plugins/Refresh_Javas/src/main/java/fiji/scripting/java/Refresh_Javas.java
src-plugins/Refresh_Javas/src/main/resources/plugins.config
src-plugins/SPIM_Opener/.factorypath
src-plugins/SPIM_Opener/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/SPIM_Opener/pom.xml
src-plugins/SPIM_Opener/src/main/java/spimopener/Check_Directories.java
src-plugins/SPIM_Opener/src/main/java/spimopener/Combine_SPIM_Projects.java
src-plugins/SPIM_Opener/src/main/java/spimopener/Count_Files.java
src-plugins/SPIM_Opener/src/main/java/spimopener/DoubleSlider.java
src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java
src-plugins/SPIM_Opener/src/main/java/spimopener/MaximumProjector.java
src-plugins/SPIM_Opener/src/main/java/spimopener/MinimumProjector.java
src-plugins/SPIM_Opener/src/main/java/spimopener/OpenerGenericDialog.java
src-plugins/SPIM_Opener/src/main/java/spimopener/Projector.java
src-plugins/SPIM_Opener/src/main/java/spimopener/Rename.java
src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMExperiment.java
src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMRegularStack.java
src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMStack.java
src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMVirtualStack.java
src-plugins/SPIM_Opener/src/main/java/spimopener/SPIM_Opener.java
src-plugins/SPIM_Opener/src/main/java/spimopener/XMLReader.java
src-plugins/SPIM_Opener/src/main/resources/plugins.config
src-plugins/SPIM_Registration/.factorypath
src-plugins/SPIM_Registration/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/SPIM_Registration/pom.xml
src-plugins/SPIM_Registration/src/main/java/MultiChannel_SPIM_Registration.java
src-plugins/SPIM_Registration/src/main/java/SPIMRegistrationAbstract.java
src-plugins/SPIM_Registration/src/main/java/SPIM_Registration.java
src-plugins/SPIM_Registration/src/main/java/SPIM_Registration_File.java
src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Apply_External_Transformation.java
src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Bead_Registration.java
src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Multi_View_Deconvolution.java
src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Multi_View_Fusion.java
src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Regtest.java
src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/FileOpenMenuEntry.java
src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/GraphFrame.java
src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/MouseListenerTimelapse.java
src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/RegistrationStatistics.java
src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/TimeLapseDisplay.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/ICP.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/PointMatchIdentification.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/SimplePointMatchIdentification.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/AbstractPointDescriptor.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LinkedPoint.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LocalCoordinateSystemPointDescriptor.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/ModelPointDescriptor.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/SimplePointDescriptor.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/exception/NoSuitablePointsException.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/Matcher.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/ModelPriorMatcher.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/ModelPriorSubsetMatcher.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/Quaternion.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/SimpleMatcher.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/SubsetMatcher.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/FixedModel.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/RigidModelOld3D.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantAffineModel3D.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantFixedModel.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantModel.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantRigidModel2D.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantRigidModel3D.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantSimilarityModel3D.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/LinearDistance.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/ManhattanDistance.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/SimilarityMeasure.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/SquareDistance.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/test/PointNode.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/test/TestPointDescriptor.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/test/VirtualPointNode.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/ClusterReconstruction.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/Reconstruction.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/AverageContent.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/AverageContentFactory.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/Blending.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/BlendingFactory.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/BlendingSimple.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/BlendingSimpleFactory.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/CombinedPixelWeightener.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/CombinedPixelWeightenerFactory.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/EntropyFast.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/EntropyFastFactory.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/FusionControl.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/GaussContent.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/GaussContentFactory.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/IsolatedPixelWeightener.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/IsolatedPixelWeightenerFactory.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/MappingFusionParalell.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/MappingFusionParalellMaxWeight.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/MappingFusionSequential.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/MappingFusionSequentialDifferentOutput.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/PreDeconvolutionFusion.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/PreDeconvolutionFusionInterface.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/PreDeconvolutionFusionSequential.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/SPIMImageFusion.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/entropy/Entropy.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/entropy/EntropyFloatArray3D.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserException.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserGeneral.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserObject.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserSPIM.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/IOFunctions.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ImgLibSaver.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ParsePattern.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ProgramConfiguration.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/SPIMConfiguration.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/TextFileAccess.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/XMLFunctions.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/Java3d.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/PointMatchGeneric.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/SketchTikZFileObject.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/TileConfigurationPhaseCorrelation.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/TileConfigurationSPIM.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/TileSPIM.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution/ExtractPSF.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution/LucyRichardsonFFT.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution/LucyRichardsonMultiViewDeconvolution.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/AdjustInput.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/BayesMVDeconvolution.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/Block.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/CUDAConvolution.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/CUDATools.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/Deconvolver.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFTThreads.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRInput.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/preprocessing/AutomaticAngleSetup.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/ViewDataBeads.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/ViewStructure.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/Bead.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadIdentification.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadRegistration.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadSegmentation.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadStructure.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/SegmentationBenchmark.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/GlobalErrorStatistics.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/GlobalErrorStatisticsImpl.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/ViewErrorPairWise.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/ViewErrorStatistics.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/DoGMaximum.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/LaPlaceFunctions.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/RejectStatistics.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/AbstractDetection.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/Detection.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionIdentification.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionRegistration.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionSegmentation.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionStructure.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionView.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/CoordSystem3d.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/CoordSystemSecure3d.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/CorrespondenceExtraction.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/ModelBased3d.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/SparseCorrespondenceExtraction.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/segmentation/NucleiConfiguration.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/segmentation/Nucleus.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/segmentation/NucleusIdentification.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/segmentation/NucleusStructure.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/threshold/ComponentProperties.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/threshold/ConnectedComponent.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/segmentation/DOM.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/segmentation/IntegralImage3d.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/segmentation/InteractiveDoG.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/segmentation/InteractiveIntegral.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/segmentation/SimplePeak.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/simulation/SimulateBeadImage.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/FastMatrix.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/FastMatrixN.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/JacobiDouble.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Line.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Plane.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Point3d.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Triangle.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/BeadTransformGroup.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/Motion3D.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/PreviewRegistration.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/Viewer3dFunctions.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizationFunctions.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizationSketchTikZ.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizeBeads.java
src-plugins/SPIM_Registration/src/main/java/mpicbg/util/TransformUtils.java
src-plugins/SPIM_Registration/src/main/resources/LICENSE
src-plugins/SPIM_Registration/src/main/resources/plugins.config
src-plugins/Samples_/.factorypath
src-plugins/Samples_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Samples_/pom.xml
src-plugins/Samples_/src/main/resources/plugins.config
src-plugins/Scala_Interpreter/pom.xml
src-plugins/Scala_Interpreter/src/main/java/emblcmci/scalainterp/Refresh_Scala_Script.java
src-plugins/Scala_Interpreter/src/main/java/emblcmci/scalainterp/Scala_Interpreter.java
src-plugins/Scala_Interpreter/src/main/java/emblcmci/scalainterp/package-info.java
src-plugins/Scala_Interpreter/src/main/resources/plugins.config
src-plugins/Script_Editor/.factorypath
src-plugins/Script_Editor/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Script_Editor/extract-macro-tokens.bsh
src-plugins/Script_Editor/fiji/scripting/ClojureTokenMaker.flex
src-plugins/Script_Editor/fiji/scripting/ImageJMacroTokenMaker.flex
src-plugins/Script_Editor/fiji/scripting/Makefile.old
src-plugins/Script_Editor/fiji/scripting/MatlabTokenMaker.flex
src-plugins/Script_Editor/fiji/scripting/TODO
src-plugins/Script_Editor/pom.xml
src-plugins/Script_Editor/src/main/java/fiji/scripting/BookmarkDialog.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/BreakpointManager.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/CCellRenderer.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/ClassNameFunctions.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/ClojureTokenMaker.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/DiffView.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/EditorPane.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/ErrorHandler.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/ExceptionHandler.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/FindAndReplaceDialog.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/ImageJMacroTokenMaker.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/JTextAreaOutputStream.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/Languages.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/LogComponentCommits.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/MacroFunctions.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/MatlabTokenMaker.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/OpenSourceForMenuItem.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/ReadyForUpload.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/RecentFilesMenuItem.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/RunFijiBuild.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/Script_Editor.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/ShowPluginChanges.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/StartDebugging.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/TextEditor.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/TokenFunctions.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/completion/ClassCompletionProvider.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/completion/ClassMethod.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/completion/ClassName.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/completion/ClassNames.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/completion/ConstructorParser.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/completion/DefaultProvider.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/completion/ImportStatementsParser.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/completion/ImportedClassObjects.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/completion/Item.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/completion/KeywordsCompletion.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/completion/ObjStartCompletions.java
src-plugins/Script_Editor/src/main/java/fiji/scripting/completion/Package.java
src-plugins/Script_Editor/src/main/resources/plugins.config
src-plugins/Script_Editor/src/main/resources/templates/Beanshell/Debugging.bsh
src-plugins/Script_Editor/src/main/resources/templates/Java/Bare_PlugIn.java
src-plugins/Script_Editor/src/main/resources/templates/Java/Bare_PlugInFilter.java
src-plugins/Script_Editor/src/main/resources/templates/Java/Bare_Reader_PlugIn.java
src-plugins/Script_Editor/src/main/resources/templates/Java/Bare_Tool.java
src-plugins/Script_Editor/src/main/resources/templates/Java/Bare_Tracking_Tool.java
src-plugins/Script_Editor/src/main/resources/templates/Java/ImgLib2_Plugin.java
src-plugins/Script_Editor/src/main/resources/templates/Java/JFreeChart_Example.java
src-plugins/Script_Editor/src/main/resources/templates/Java/Optimization_Example.java
src-plugins/Script_Editor/src/main/resources/templates/Java/Plot_Example.java
src-plugins/Script_Editor/src/main/resources/templates/Java/Process_Pixels.java
src-plugins/Script_Editor/src/main/resources/templates/Macros/Process_Folder.ijm
src-plugins/Script_Editor/src/main/resources/templates/Macros/Scale_All_ROIs.ijm
src-plugins/Script_Editor/src/main/resources/templates/Python/Hello_World.py
src-plugins/Script_Editor/src/main/resources/templates/Python/Invert_Image.py
src-plugins/Script_Editor/src/main/resources/templates/Python/Invert_Selection.py
src-plugins/Script_Editor/src/main/resources/templates/Python/Loop_over_slices.py
src-plugins/Script_Editor/src/main/resources/templates/Python/Modify_Image_Properties.py
src-plugins/Script_Editor/src/main/resources/templates/Python/New_Image.py
src-plugins/Script_Editor/src/main/resources/templates/Python/Open_Image.py
src-plugins/Script_Editor/src/main/resources/templates/Python/Open_Sample.py
src-plugins/Script_Editor/src/main/resources/templates/Python/Rotate_ROI.py
src-plugins/Script_Editor/src/main/resources/templates/Python/Select_All.py
src-plugins/Script_Editor/src/main/resources/templates/Python/Select_None.py
src-plugins/Script_Editor/src/main/resources/templates/Python/Specify_Roi.py
src-plugins/Script_Editor/src/main/resources/templates/Python/Straighten.py
src-plugins/Series_Labeler/.factorypath
src-plugins/Series_Labeler/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Series_Labeler/pom.xml
src-plugins/Series_Labeler/src/main/java/BorderPanel.java
src-plugins/Series_Labeler/src/main/java/HybridDateFormat.java
src-plugins/Series_Labeler/src/main/java/Series_Labeler.java
src-plugins/Series_Labeler/src/main/resources/plugins.config
src-plugins/SheppLogan_/.factorypath
src-plugins/SheppLogan_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/SheppLogan_/pom.xml
src-plugins/SheppLogan_/src/main/java/SheppLogan_.java
src-plugins/SheppLogan_/src/main/resources/plugins.config
src-plugins/Sholl_Analysis/.gitignore
src-plugins/Sholl_Analysis/Notes
src-plugins/Sholl_Analysis/README
src-plugins/Sholl_Analysis/misc/v1/ShollAnalysis.pdf
src-plugins/Sholl_Analysis/pom.xml
src-plugins/Sholl_Analysis/src/main/java/Sholl_Analysis.java
src-plugins/Sholl_Analysis/src/main/java/Sholl_Utils.java
src-plugins/Sholl_Analysis/src/main/resources/plugins.config
src-plugins/Sholl_Analysis/src/main/resources/resources/ddaC.tif
src-plugins/Sholl_Analysis/src/main/resources/resources/ddaC_info
src-plugins/Simple_Neurite_Tracer/.factorypath
src-plugins/Simple_Neurite_Tracer/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Simple_Neurite_Tracer/pom.xml
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Albert_Test.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/AnalyzeTracings_.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/AutoPoint.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/AutoSearchThread.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/AutoTracerCanvas.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Auto_Tracer.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/CMTKInversePathTransformer.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/ClarifyingKeyListener.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Connectivity.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/CreateTracingVolume_.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/EigenResultsDouble.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/EigenResultsFloat.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Fill.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/FillWindow.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/FillerProgressCallback.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/FillerThread.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/FittingProgress.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/GraphNode.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/InteractiveTracerCanvas.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Load_Auto_Traces.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/MultiTaskProgress.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/NearPoint.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/NeuriteTracerResultsDialog.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/NewAnalyzeTracings_.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/NormalPlaneCanvas.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Path.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathAndFillListener.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathAndFillManager.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathColorsCanvas.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathDownsampler.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathFitter.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathResult.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathTransformer.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PathWindow.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PointInImage.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/PointSelectionBehavior.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/QueueJumpingKeyListener.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SNTEvent.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SNTListener.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SWCImportOptionsDialog.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SWCPoint.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SearchInterface.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SearchNode.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SearchProgressCallback.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SearchThread.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/ShollAnalysisDialog.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SimpleNeuriteTracer.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Simple_Neurite_Tracer.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SinglePathsGraph.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/SwingSafeResult.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/Test_Single_Voxel.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/TraceLoaderListener.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/TracerCanvas.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/TracerThread.java
src-plugins/Simple_Neurite_Tracer/src/main/java/tracing/TubularGeodesicsTracer.java
src-plugins/Simple_Neurite_Tracer/src/main/resources/plugins.config
src-plugins/Simple_Neurite_Tracer/src/main/resources/tracing/COPYING
src-plugins/Simple_Neurite_Tracer/src/main/resources/tracing/README
src-plugins/Simple_Neurite_Tracer/src/test/java/tracing/Test2DTracing.java
src-plugins/Simple_Neurite_Tracer/src/test/java/tracing/Test3DTracing.java
src-plugins/Simple_Neurite_Tracer/tracing/merge-dot-files
src-plugins/Siox_Segmentation/.factorypath
src-plugins/Siox_Segmentation/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Siox_Segmentation/pom.xml
src-plugins/Siox_Segmentation/src/main/java/org/siox/ColorSignature.java
src-plugins/Siox_Segmentation/src/main/java/org/siox/SioxSegmentator.java
src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ControlJPanel.java
src-plugins/Siox_Segmentation/src/main/java/org/siox/example/CursorFactory.java
src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ExtensionFileFilter.java
src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ImagePane.java
src-plugins/Siox_Segmentation/src/main/java/org/siox/example/JRuler.java
src-plugins/Siox_Segmentation/src/main/java/org/siox/example/Main.java
src-plugins/Siox_Segmentation/src/main/java/org/siox/example/ScrollDisplay.java
src-plugins/Siox_Segmentation/src/main/java/org/siox/util/IntArrayList.java
src-plugins/Siox_Segmentation/src/main/java/org/siox/util/IntHashMap.java
src-plugins/Siox_Segmentation/src/main/java/org/siox/util/Utils.java
src-plugins/Siox_Segmentation/src/main/java/siox/ControlJPanel.java
src-plugins/Siox_Segmentation/src/main/java/siox/ImageOverlay.java
src-plugins/Siox_Segmentation/src/main/java/siox/Load_Segmentation.java
src-plugins/Siox_Segmentation/src/main/java/siox/RoiOverlay.java
src-plugins/Siox_Segmentation/src/main/java/siox/SegmentationGUI.java
src-plugins/Siox_Segmentation/src/main/java/siox/SegmentationInfo.java
src-plugins/Siox_Segmentation/src/main/java/siox/Siox_Segmentation.java
src-plugins/Siox_Segmentation/src/main/javadoc/resources/org/siox/example/package.html
src-plugins/Siox_Segmentation/src/main/javadoc/resources/org/siox/package.html
src-plugins/Siox_Segmentation/src/main/javadoc/resources/org/siox/util/package.html
src-plugins/Siox_Segmentation/src/main/resources/plugins.config
src-plugins/Skeletonize3D_/.factorypath
src-plugins/Skeletonize3D_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Skeletonize3D_/pom.xml
src-plugins/Skeletonize3D_/src/main/java/Skeletonize3D_/Skeletonize3D_.java
src-plugins/Skeletonize3D_/src/main/resources/plugins.config
src-plugins/Snakuscule_/.factorypath
src-plugins/Snakuscule_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Snakuscule_/pom.xml
src-plugins/Snakuscule_/src/main/java/Snakuscule_.java
src-plugins/Snakuscule_/src/main/java/snake2D/Snake2D.java
src-plugins/Snakuscule_/src/main/java/snake2D/Snake2DKeeper.java
src-plugins/Snakuscule_/src/main/java/snake2D/Snake2DNode.java
src-plugins/Snakuscule_/src/main/java/snake2D/Snake2DScale.java
src-plugins/Snakuscule_/src/main/resources/plugins.config
src-plugins/SplineDeformationGenerator_/.factorypath
src-plugins/SplineDeformationGenerator_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/SplineDeformationGenerator_/pom.xml
src-plugins/SplineDeformationGenerator_/src/main/java/SplineDeformationGenerator/SplineDeformationGenerator_.java
src-plugins/SplineDeformationGenerator_/src/main/resources/plugins.config
src-plugins/StackReg_/.factorypath
src-plugins/StackReg_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/StackReg_/pom.xml
src-plugins/StackReg_/src/main/java/StackReg_.java
src-plugins/StackReg_/src/main/resources/plugins.config
src-plugins/Stack_Manipulation/.factorypath
src-plugins/Stack_Manipulation/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Stack_Manipulation/pom.xml
src-plugins/Stack_Manipulation/src/main/java/DeInterleave_.java
src-plugins/Stack_Manipulation/src/main/java/Kalman_Filter.java
src-plugins/Stack_Manipulation/src/main/java/Slice_Keeper.java
src-plugins/Stack_Manipulation/src/main/java/Slice_Remover.java
src-plugins/Stack_Manipulation/src/main/java/Stack_Interleaver.java
src-plugins/Stack_Manipulation/src/main/java/Stack_Sorter.java
src-plugins/Stack_Manipulation/src/main/java/Stack_Splitter.java
src-plugins/Stack_Manipulation/src/main/resources/Stack_Sorter_License.txt
src-plugins/Stack_Manipulation/src/main/resources/Stack_Sorter_readme.txt
src-plugins/Stack_Manipulation/src/main/resources/plugins.config
src-plugins/Statistical_Region_Merging/.factorypath
src-plugins/Statistical_Region_Merging/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Statistical_Region_Merging/pom.xml
src-plugins/Statistical_Region_Merging/src/main/java/SRM_.java
src-plugins/Statistical_Region_Merging/src/main/resources/plugins.config
src-plugins/Stitching_/.factorypath
src-plugins/Stitching_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Stitching_/pom.xml
src-plugins/Stitching_/src/main/java/DeltaVision_Converter.java
src-plugins/Stitching_/src/main/java/Stitch_Image_Collection.java
src-plugins/Stitching_/src/main/java/Stitch_Image_Directory.java
src-plugins/Stitching_/src/main/java/Stitch_Image_Grid.java
src-plugins/Stitching_/src/main/java/Stitch_Image_Grid_Sequence.java
src-plugins/Stitching_/src/main/java/Stitch_Many_Images.java
src-plugins/Stitching_/src/main/java/Stitch_Multiple_Series_File.java
src-plugins/Stitching_/src/main/java/Stitching_2D.java
src-plugins/Stitching_/src/main/java/Stitching_3D.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/CollectionStitchingImgLib.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/ComparePair.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/Downsampler.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/GlobalOptimization.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/ImageCollectionElement.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/ImagePlusTimePoint.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/PairWiseStitchingImgLib.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/PairWiseStitchingResult.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/Peak.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/PointMatchStitching.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/StitchingParameters.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/TextFileAccess.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/TileConfigurationStitching.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/AveragePixelFusion.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/BlendingPixelFusion.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/Fusion.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/ImageInterpolation.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/MaxPixelFusion.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/MedianPixelFusion.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/MinPixelFusion.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/OverlayFusion.java
src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/PixelFusion.java
src-plugins/Stitching_/src/main/java/plugin/GridType.java
src-plugins/Stitching_/src/main/java/plugin/Stitching_Grid.java
src-plugins/Stitching_/src/main/java/plugin/Stitching_Pairwise.java
src-plugins/Stitching_/src/main/java/stitching/CommonFunctions.java
src-plugins/Stitching_/src/main/java/stitching/CrossCorrelationResult2D.java
src-plugins/Stitching_/src/main/java/stitching/CrossCorrelationResult3D.java
src-plugins/Stitching_/src/main/java/stitching/FloatArray.java
src-plugins/Stitching_/src/main/java/stitching/FloatArray2D.java
src-plugins/Stitching_/src/main/java/stitching/FloatArray3D.java
src-plugins/Stitching_/src/main/java/stitching/GridLayout.java
src-plugins/Stitching_/src/main/java/stitching/ImageInformation.java
src-plugins/Stitching_/src/main/java/stitching/OverlapProperties.java
src-plugins/Stitching_/src/main/java/stitching/Point2D.java
src-plugins/Stitching_/src/main/java/stitching/Point3D.java
src-plugins/Stitching_/src/main/java/stitching/Quicksortable.java
src-plugins/Stitching_/src/main/java/stitching/model/CoordinateTransform.java
src-plugins/Stitching_/src/main/java/stitching/model/ErrorStatistic.java
src-plugins/Stitching_/src/main/java/stitching/model/InvertibleCoordinateTransform.java
src-plugins/Stitching_/src/main/java/stitching/model/InvertibleModel.java
src-plugins/Stitching_/src/main/java/stitching/model/Model.java
src-plugins/Stitching_/src/main/java/stitching/model/NoninvertibleModelException.java
src-plugins/Stitching_/src/main/java/stitching/model/NotEnoughDataPointsException.java
src-plugins/Stitching_/src/main/java/stitching/model/PaintInvertibleCoordinateTransformThread.java
src-plugins/Stitching_/src/main/java/stitching/model/Point.java
src-plugins/Stitching_/src/main/java/stitching/model/PointMatch.java
src-plugins/Stitching_/src/main/java/stitching/model/Tile.java
src-plugins/Stitching_/src/main/java/stitching/model/TileConfiguration.java
src-plugins/Stitching_/src/main/java/stitching/model/TranslationModel2D.java
src-plugins/Stitching_/src/main/java/stitching/model/TranslationModel3D.java
src-plugins/Stitching_/src/main/java/tools/RoiPicker.java
src-plugins/Stitching_/src/main/resources/images/column1.png
src-plugins/Stitching_/src/main/resources/images/column2.png
src-plugins/Stitching_/src/main/resources/images/column3.png
src-plugins/Stitching_/src/main/resources/images/column4.png
src-plugins/Stitching_/src/main/resources/images/fromFile.png
src-plugins/Stitching_/src/main/resources/images/position.png
src-plugins/Stitching_/src/main/resources/images/row1.png
src-plugins/Stitching_/src/main/resources/images/row2.png
src-plugins/Stitching_/src/main/resources/images/row3.png
src-plugins/Stitching_/src/main/resources/images/row4.png
src-plugins/Stitching_/src/main/resources/images/sequential.png
src-plugins/Stitching_/src/main/resources/images/snake1.png
src-plugins/Stitching_/src/main/resources/images/snake2.png
src-plugins/Stitching_/src/main/resources/images/snake3.png
src-plugins/Stitching_/src/main/resources/images/snake4.png
src-plugins/Stitching_/src/main/resources/images/snake5.png
src-plugins/Stitching_/src/main/resources/images/snake6.png
src-plugins/Stitching_/src/main/resources/images/snake7.png
src-plugins/Stitching_/src/main/resources/images/snake8.png
src-plugins/Stitching_/src/main/resources/images/unknown.png
src-plugins/Stitching_/src/main/resources/plugins.config
src-plugins/Sync_Win/.factorypath
src-plugins/Sync_Win/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Sync_Win/pom.xml
src-plugins/Sync_Win/src/main/java/DisplayChangeEvent.java
src-plugins/Sync_Win/src/main/java/DisplayChangeListener.java
src-plugins/Sync_Win/src/main/java/IJEventMulticaster.java
src-plugins/Sync_Win/src/main/java/IntField.java
src-plugins/Sync_Win/src/main/java/IntSlider.java
src-plugins/Sync_Win/src/main/java/OpenImage5DAdapter.java
src-plugins/Sync_Win/src/main/java/OpenImage5DWindow.java
src-plugins/Sync_Win/src/main/java/OpenStackAdapter.java
src-plugins/Sync_Win/src/main/java/OpenStackWindow.java
src-plugins/Sync_Win/src/main/java/Sync_Measure_3D.java
src-plugins/Sync_Win/src/main/java/Sync_Windows.java
src-plugins/Sync_Win/src/main/java/TextFieldFocus.java
src-plugins/Sync_Win/src/main/resources/SyncWindows/doc/SyncWindows-changes.txt
src-plugins/Sync_Win/src/main/resources/plugins.config
src-plugins/Thread_Killer/.factorypath
src-plugins/Thread_Killer/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Thread_Killer/pom.xml
src-plugins/Thread_Killer/src/main/java/Thread_Killer.java
src-plugins/Thread_Killer/src/main/resources/plugins.config
src-plugins/Threshold_Colour/.factorypath
src-plugins/Threshold_Colour/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Threshold_Colour/pom.xml
src-plugins/Threshold_Colour/src/main/java/RGBtoLab_.java
src-plugins/Threshold_Colour/src/main/java/RGBtoYUV_.java
src-plugins/Threshold_Colour/src/main/java/Threshold_Colour.java
src-plugins/Threshold_Colour/src/main/resources/Threshold_Colour_readme.txt
src-plugins/Threshold_Colour/src/main/resources/plugins.config
src-plugins/Time_Stamper/.factorypath
src-plugins/Time_Stamper/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Time_Stamper/pom.xml
src-plugins/Time_Stamper/src/main/java/Time_Stamper.java
src-plugins/Time_Stamper/src/main/resources/plugins.config
src-plugins/ToAST_/.factorypath
src-plugins/ToAST_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/ToAST_/pom.xml
src-plugins/ToAST_/src/main/java/ToAST25_.java
src-plugins/ToAST_/src/main/java/parObject.java
src-plugins/ToAST_/src/main/resources/plugins.config
src-plugins/TopoJ_/.factorypath
src-plugins/TopoJ_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/TopoJ_/pom.xml
src-plugins/TopoJ_/src/main/java/Compute_Topography.java
src-plugins/TopoJ_/src/main/java/Remove_Slope.java
src-plugins/TopoJ_/src/main/resources/plugins.config
src-plugins/TrackMate_/.factorypath
src-plugins/TrackMate_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/TrackMate_/TODO
src-plugins/TrackMate_/docs/TrackMateWizardFlow.ai
src-plugins/TrackMate_/docs/trackmate.xml
src-plugins/TrackMate_/pom.xml
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/Dimension.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/FeatureModel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/InfoTextable.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/LoadTrackMatePlugIn_.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/Logger.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/ManualTrackingPlugIn_.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/Model.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/ModelChangeEvent.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/ModelChangeListener.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/SelectionChangeEvent.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/SelectionChangeListener.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/SelectionModel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/Settings.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/Spot.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/SpotCollection.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/TrackMate.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/TrackMatePlugIn_.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/TrackModel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/AbstractTMAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/CaptureOverlayAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/CopyOverlayAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/ExportStatsToIJAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/ExportTracksToXML.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/ExtractTrackStackAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/ISBIChallengeExporter.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/LinkNew3DViewerAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/PlotNSpotsVsTimeAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/RadiusToEstimatedAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/RecalculateFeatureAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/ResetRadiusAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/ResetSpotTimeFeatureAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/action/TrackMateAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/DetectorKeys.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/DogDetector.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/DogDetectorFactory.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/DownsampleLogDetector.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/DownsampleLogDetectorFactory.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/LogDetector.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/LogDetectorFactory.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/ManualDetectorFactory.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/SpotDetector.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/SpotDetectorFactory.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/semiauto/AbstractSemiAutoTracker.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/semiauto/SemiAutoTracker.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/subpixel/QuadraticSubpixelLocalization.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/subpixel/SubPixelLocalization.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/util/MedianFilter3x3.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/util/SquareNeighborhood3x3.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/detection/util/SquareNeighborhoodCursor3x3.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/AbstractFeatureGrapher.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/EdgeFeatureCalculator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/EdgeFeatureGrapher.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/FeatureAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/FeatureFilter.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/ModelFeatureUpdater.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/SpotFeatureCalculator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/SpotFeatureGrapher.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/TrackFeatureCalculator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/TrackFeatureGrapher.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/edges/EdgeAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/edges/EdgeTargetAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/edges/EdgeTimeLocationAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/edges/EdgeVelocityAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/edges/package-info.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/IndependentSpotFeatureAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/SpotAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/SpotAnalyzerFactory.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/SpotContrastAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/SpotContrastAnalyzerFactory.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/SpotContrastAndSNRAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/SpotContrastAndSNRAnalyzerFactory.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/SpotIntensityAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/SpotIntensityAnalyzerFactory.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/SpotMorphologyAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/SpotMorphologyAnalyzerFactory.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/SpotRadiusEstimator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/spot/SpotRadiusEstimatorFactory.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/track/TrackAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/track/TrackBranchingAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/track/TrackDurationAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/track/TrackIndexAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/track/TrackLocationAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/features/track/TrackSpeedStatisticsAnalyzer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/graph/Function1.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/graph/Function2.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/graph/GraphUtils.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/graph/OutputFunction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/graph/RecursiveCumSum.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/graph/SortedDepthFirstIterator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/graph/StringFormater.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/graph/TimeDirectedDepthFirstIterator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/graph/TimeDirectedNeighborIndex.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/graph/TimeDirectedSortedDepthFirstIterator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/graph/package-info.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/ConfigurationPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/DisplaySettingsEvent.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/DisplaySettingsListener.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/GrapherPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/GuiUtils.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/LogPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/ManualTrackingGUIController.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/TrackMateGUIController.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/TrackMateGUIModel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/TrackMateWizard.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/ActionChooserDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/ConfigureViewsDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/DetectionDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/DetectorChoiceDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/DetectorConfigurationDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/GrapherDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/InitFilterDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/LoadDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/LogPanelDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/SaveDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/SomeDialogDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/SpotFilterDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/StartDialogDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/TrackFilterDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/TrackerChoiceDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/TrackerConfigurationDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/TrackingDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/ViewChoiceDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/descriptors/WizardPanelDescriptor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/ActionChooserPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/ActionListenablePanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/ConfigureViewsPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/FilterPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/InitFilterPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/ListChooserPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/StartDialogPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/components/CategoryJComboBox.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/components/ColorByFeatureGUIPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/components/FeaturePlotSelectionPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/components/FilterGuiPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/components/ImagePlusChooser.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/components/JNumericTextField.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/components/JPanelColorByFeatureGUI.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/components/JPanelFeaturePenalty.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/components/JPanelFeatureSelectionGui.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/detector/BasicDetectorConfigurationPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/detector/DogDetectorConfigurationPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/detector/DownSampleLogDetectorConfigurationPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/detector/LogDetectorConfigurationPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/tracker/JPanelTrackerSettingsMain.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/tracker/LAPTrackerSettingsPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/tracker/NearestNeighborTrackerSettingsPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/gui/panels/tracker/SimpleLAPTrackerSettingsPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/io/IOUtils.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/io/TmXmlKeys.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/io/TmXmlKeys_v12.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/io/TmXmlKeys_v20.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/io/TmXmlReader.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/io/TmXmlReader_v12.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/io/TmXmlReader_v20.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/io/TmXmlWriter.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/providers/AbstractProvider.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/providers/ActionProvider.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/providers/DetectorProvider.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/providers/EdgeAnalyzerProvider.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/providers/SpotAnalyzerProvider.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/providers/TrackAnalyzerProvider.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/providers/TrackerProvider.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/providers/ViewProvider.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/BadEdgeRemoval_TestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/ConcurrentSpotTestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/DumbTracker_TestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/ExportStats_TestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/Graph_Test.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/HyperStackDisplayerTestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/LAPTrackerTestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/LogDetectorTestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/ManualTrackingPlugIn_TestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/NNTrackerTest.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/SpotDisplayer3DModel_TestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/SpotDisplayer3DTestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/SpotFeatureGrapher_TestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/SpotFilteringPerf_TestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/SpotGroupNodeTestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/SpotNeighborhoodTest.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/TmXmlReaderTestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/TmXmlReaderV12_TestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/TmXmlReaderV20_TestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/TrackBranchingAnalyzer_Test.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/TrackLayout_Test.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/TrackMateLoading_TestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/TrackMate_TestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/TrackSchemeTestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tests/TrackVisualizerTestDrive.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/FastLAPTracker.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/LAPTracker.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/LAPUtils.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/ManualTracker.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/SimpleFastLAPTracker.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/SimpleLAPTracker.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/SpotTracker.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/TrackerKeys.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/costfunction/CostFunctions.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/costfunction/GapClosingCostFunction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/costfunction/LinkingCostFunction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/costfunction/MergingCostFunction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/costfunction/SplittingCostFunction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/costmatrix/LAPTrackerCostMatrixCreator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/costmatrix/LinkingCostMatrixCreator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/costmatrix/TrackSegmentCostMatrixCreator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/dumb/DumbTracker.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/hungarian/AssignmentAlgorithm.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/hungarian/AssignmentProblem.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/hungarian/HungarianAlgorithm.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/hungarian/MunkresKuhnAlgorithm.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/kdtree/FlagNode.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/kdtree/NearestNeighborFlagSearchOnKDTree.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/tracking/kdtree/NearestNeighborTracker.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/AlphanumComparator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/ChartExporter.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/CropImgView.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/DefaultFileFilter.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/ExportableChartPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/JLabelLogger.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/ModelTools.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/OnRequestUpdater.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/SpotNeighborhood.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/SpotNeighborhoodCursor.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/TMUtils.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/TrackSplitter.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/Version.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/XYEdgeRenderer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/XYEdgeSeries.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/util/XYEdgeSeriesCollection.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/AbstractTrackMateModelView.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/DummySpotColorGenerator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/DummyTrackColorGenerator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/FeatureColorGenerator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/PerEdgeFeatureColorGenerator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/PerTrackFeatureColorGenerator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/SpotColorGenerator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/TrackColorGenerator.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/TrackMateModelView.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/ViewUtils.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/hyperstack/HyperStackDisplayer.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/hyperstack/SpotEditTool.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/hyperstack/SpotEditToolConfigPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/hyperstack/SpotOverlay.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/hyperstack/TrackOverlay.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/threedviewer/SpotDisplayer3D.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/threedviewer/SpotGroupNode.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/threedviewer/TrackDisplayNode.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/FeaturePlotSelectionPanel.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/InfoPane.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/JGraphXAdapter.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/SaveAction.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/SpotIconGrabber.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/SpotImageUpdater.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/TrackScheme.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/TrackSchemeFrame.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/TrackSchemeGraphComponent.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/TrackSchemeGraphLayout.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/TrackSchemePopupMenu.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/TrackSchemeStylist.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/TrackSchemeSvgCanvas.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/TrackSchemeToolbar.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/mxScaledLabelShape.java
src-plugins/TrackMate_/src/main/java/fiji/plugin/trackmate/visualization/trackscheme/mxSideTextShape.java
src-plugins/TrackMate_/src/main/java/org/jfree/chart/annotations/XYTextSimpleAnnotation.java
src-plugins/TrackMate_/src/main/java/org/jfree/chart/renderer/InterpolatePaintScale.java
src-plugins/TrackMate_/src/main/java/org/jfree/data/statistics/LogHistogramDataset.java
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/EdgeIcon.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/EdgeIcon_small.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/EdgeIcon_supersmall.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/ISBIlogo.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/SpotIcon.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/SpotIcon_small.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/SpotIcon_supersmall.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/TrackIcon.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/TrackIcon_small.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/add.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/arrow_down.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/arrow_left.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/arrow_refresh_small.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/arrow_right.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/arrow_up.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/arrow_updown.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/calculator.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/cancel.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/control_play_blue.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/delete.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/flag_checked.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/information.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/lightbulb.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/lightbulb_off.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/magnifier.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/page_copy.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/page_go.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/page_save.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/page_white_link.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/photo_add.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/spot_icon.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/gui/images/time.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/Label-icons-disabled.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/Label-icons.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/add.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/application.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/application_view_columns.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/camera_edit.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/camera_export.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/camera_go.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/connect.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/connect_bw.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/delete.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/forbid_connect.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/images.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/images_bw.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/plots.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/refresh.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/shape_group.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/shape_square-forbid.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/shape_square.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/shape_ungroup.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/style.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/theme.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/track_scheme.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/zoom.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/zoom_in.png
src-plugins/TrackMate_/src/main/resources/fiji/plugin/trackmate/visualization/trackscheme/resources/zoom_out.png
src-plugins/TrackMate_/src/main/resources/plugins.config
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/ModelTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/SpotCollectionTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/TrackModelTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/features/edge/EdgeTargetAnalyzerTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/features/edge/EdgeTimeAndLocationAnalyzerTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/features/edge/EdgeVelocityAnalyzerTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/features/spot/BlobDescriptiveStatisticsTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/features/spot/RadiusEstimatorTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/features/track/TrackBranchingAnalyzerTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/features/track/TrackDurationAnalyzerTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/features/track/TrackIndexAnalyzerTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/features/track/TrackLocationAnalyzerTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/features/track/TrackSpeedStatisticsAnalyzerTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/graph/RecursiveCumSumTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/graph/SortedDepthFirstIteratorTest.java
src-plugins/TrackMate_/src/test/java/fiji/plugin/trackmate/tracking/LAPTrackerTest.java
src-plugins/Trainable_Segmentation/.factorypath
src-plugins/Trainable_Segmentation/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Trainable_Segmentation/pom.xml
src-plugins/Trainable_Segmentation/src/main/java/ai/AttributeClassPair.java
src-plugins/Trainable_Segmentation/src/main/java/ai/BalancedRandomForest.java
src-plugins/Trainable_Segmentation/src/main/java/ai/BalancedRandomTree.java
src-plugins/Trainable_Segmentation/src/main/java/ai/GiniFunction.java
src-plugins/Trainable_Segmentation/src/main/java/ai/InformationGainFunction.java
src-plugins/Trainable_Segmentation/src/main/java/ai/SplitFunction.java
src-plugins/Trainable_Segmentation/src/main/java/ai/Splitter.java
src-plugins/Trainable_Segmentation/src/main/java/ai/VotesCollector.java
src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/Benchmark.java
src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/DataCache.java
src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/FastRandomForest.java
src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/FastRandomTree.java
src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/FastRfBagging.java
src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/FastRfUtils.java
src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/SplitCriteria.java
src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/VotesCollector.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStack.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStack3D.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStackArray.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/ImageOverlay.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/RoiListOverlay.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/Trainable_Segmentation.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/WekaSegmentation.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/Weka_Segmentation.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/filters/Entropy_Filter.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/filters/Kuwahara.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/filters/Lipschitz_.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/AdjustedRandError.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/ClassificationStatistics.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/ClusteredWarpingMismatches.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/Metrics.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/PixelError.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/RandError.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/WarpingError.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/WarpingResults.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/utils/PrincipalComponentAnalysis.java
src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/utils/Utils.java
src-plugins/Trainable_Segmentation/src/main/resources/LICENSE-FastRandomForest.txt
src-plugins/Trainable_Segmentation/src/main/resources/README-FastRandomForest.txt
src-plugins/Trainable_Segmentation/src/main/resources/plugins.config
src-plugins/Trainable_Segmentation/src/main/resources/trainableSegmentation/images/weka.png
src-plugins/TrakEM2_Archipelago/pom.xml
src-plugins/TrakEM2_Archipelago/src/main/java/edu/utexas/clm/archipelago/ijsupport/AbstractAffineModelChunk.java
src-plugins/TrakEM2_Archipelago/src/main/java/edu/utexas/clm/archipelago/ijsupport/FloatProcessorChunk.java
src-plugins/TrakEM2_Archipelago/src/main/java/edu/utexas/clm/archipelago/ijsupport/TrakEM2Archipelago.java
src-plugins/TrakEM2_Archipelago/src/main/resources/FijiArchipelago.trakem2
src-plugins/TransformJ_/.factorypath
src-plugins/TransformJ_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/TransformJ_/pom.xml
src-plugins/TransformJ_/src/main/java/TJ.java
src-plugins/TransformJ_/src/main/java/TJ_About.java
src-plugins/TransformJ_/src/main/java/TJ_Affine.java
src-plugins/TransformJ_/src/main/java/TJ_Crop.java
src-plugins/TransformJ_/src/main/java/TJ_Embed.java
src-plugins/TransformJ_/src/main/java/TJ_Matrix.java
src-plugins/TransformJ_/src/main/java/TJ_Mirror.java
src-plugins/TransformJ_/src/main/java/TJ_Options.java
src-plugins/TransformJ_/src/main/java/TJ_Panel.java
src-plugins/TransformJ_/src/main/java/TJ_Rotate.java
src-plugins/TransformJ_/src/main/java/TJ_Scale.java
src-plugins/TransformJ_/src/main/java/TJ_Translate.java
src-plugins/TransformJ_/src/main/java/TJ_Turn.java
src-plugins/TransformJ_/src/main/java/TJ_Website.java
src-plugins/TransformJ_/src/main/resources/copyright.txt
src-plugins/TransformJ_/src/main/resources/plugins.config
src-plugins/TurboReg_/.factorypath
src-plugins/TurboReg_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/TurboReg_/api/package-list
src-plugins/TurboReg_/api/stylesheet.css
src-plugins/TurboReg_/pom.xml
src-plugins/TurboReg_/src/main/java/TurboReg_.java
src-plugins/TurboReg_/src/main/javadoc/resources/api/TurboReg_.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/allclasses-frame.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/allclasses-noframe.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/constant-values.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/deprecated-list.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/help-doc.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/index-all.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/index.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/overview-tree.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/package-frame.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/package-summary.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/package-tree.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/turboRegCredits.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/turboRegDialog.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/turboRegFinalAction.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/turboRegImage.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/turboRegMask.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/turboRegPointAction.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/turboRegPointHandler.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/turboRegPointToolbar.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/turboRegProgressBar.html
src-plugins/TurboReg_/src/main/javadoc/resources/api/turboRegTransform.html
src-plugins/TurboReg_/src/main/resources/api/resources/inherit.gif
src-plugins/TurboReg_/src/main/resources/plugins.config
src-plugins/UnwarpJ_/.factorypath
src-plugins/UnwarpJ_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/UnwarpJ_/pom.xml
src-plugins/UnwarpJ_/src/main/java/UnwarpJ_.java
src-plugins/UnwarpJ_/src/main/resources/plugins.config
src-plugins/Updater_Fix/.factorypath
src-plugins/Updater_Fix/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Updater_Fix/pom.xml
src-plugins/Updater_Fix/src/main/java/fiji/updater/BinaryPList.java
src-plugins/Updater_Fix/src/main/java/fiji/updater/Fix.java
src-plugins/VIB-lib/.factorypath
src-plugins/VIB-lib/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/VIB-lib/ROIBrushTool.txt
src-plugins/VIB-lib/compare-stacks.rb
src-plugins/VIB-lib/pom.xml
src-plugins/VIB-lib/sed.py
src-plugins/VIB-lib/src/main/java/adt/Byte3DArray.java
src-plugins/VIB-lib/src/main/java/adt/ByteProbability.java
src-plugins/VIB-lib/src/main/java/adt/Connectivity2D.java
src-plugins/VIB-lib/src/main/java/adt/PixelStats.java
src-plugins/VIB-lib/src/main/java/adt/Points.java
src-plugins/VIB-lib/src/main/java/adt/Sparse3DByteArray.java
src-plugins/VIB-lib/src/main/java/adt/Unsparse3DByteArray.java
src-plugins/VIB-lib/src/main/java/amira/AmiraMeshDecoder.java
src-plugins/VIB-lib/src/main/java/amira/AmiraMeshEncoder.java
src-plugins/VIB-lib/src/main/java/amira/AmiraParameters.java
src-plugins/VIB-lib/src/main/java/amira/AmiraTable.java
src-plugins/VIB-lib/src/main/java/amira/AmiraTableEncoder.java
src-plugins/VIB-lib/src/main/java/client/ArchiveClient.java
src-plugins/VIB-lib/src/main/java/color/CIELAB.java
src-plugins/VIB-lib/src/main/java/delaunay/DelaunayTriangulation.java
src-plugins/VIB-lib/src/main/java/delaunay/Pnt.java
src-plugins/VIB-lib/src/main/java/delaunay/Simplex.java
src-plugins/VIB-lib/src/main/java/delaunay/Triangulation.java
src-plugins/VIB-lib/src/main/java/distance/Correlation.java
src-plugins/VIB-lib/src/main/java/distance/Euclidean.java
src-plugins/VIB-lib/src/main/java/distance/MutualInformation.java
src-plugins/VIB-lib/src/main/java/distance/PixelPairs.java
src-plugins/VIB-lib/src/main/java/distance/Thresholded.java
src-plugins/VIB-lib/src/main/java/distance/TwoValues.java
src-plugins/VIB-lib/src/main/java/events/RoiEvent.java
src-plugins/VIB-lib/src/main/java/events/RoiListener.java
src-plugins/VIB-lib/src/main/java/events/RoiWatcher.java
src-plugins/VIB-lib/src/main/java/events/SliceEvent.java
src-plugins/VIB-lib/src/main/java/events/SliceListener.java
src-plugins/VIB-lib/src/main/java/events/SliceWatcher.java
src-plugins/VIB-lib/src/main/java/features/ComputeCurvatures.java
src-plugins/VIB-lib/src/main/java/features/GaussianGenerationCallback.java
src-plugins/VIB-lib/src/main/java/features/HessianEvalueProcessor.java
src-plugins/VIB-lib/src/main/java/features/SigmaPalette.java
src-plugins/VIB-lib/src/main/java/features/SurfacenessProcessor.java
src-plugins/VIB-lib/src/main/java/features/TubenessProcessor.java
src-plugins/VIB-lib/src/main/java/gui/GuiBuilder.java
src-plugins/VIB-lib/src/main/java/inference/BEPBBinBoundariesInference.java
src-plugins/VIB-lib/src/main/java/inference/BEPBInference.java
src-plugins/VIB-lib/src/main/java/inference/BEPBModelInference.java
src-plugins/VIB-lib/src/main/java/inference/BinBoundariesComputation.java
src-plugins/VIB-lib/src/main/java/inference/BinBoundariesInference.java
src-plugins/VIB-lib/src/main/java/inference/BinClassificationInference.java
src-plugins/VIB-lib/src/main/java/inference/DistributionInference.java
src-plugins/VIB-lib/src/main/java/inference/Inference.java
src-plugins/VIB-lib/src/main/java/inference/InferenceCaller.java
src-plugins/VIB-lib/src/main/java/inference/LogFuncs.java
src-plugins/VIB-lib/src/main/java/inference/MAPInference.java
src-plugins/VIB-lib/src/main/java/inference/ModelInference.java
src-plugins/VIB-lib/src/main/java/javax/media/j3d/RenderingError.java
src-plugins/VIB-lib/src/main/java/javax/media/j3d/RenderingErrorListener.java
src-plugins/VIB-lib/src/main/java/landmarks/AffineFromLandmarks.java
src-plugins/VIB-lib/src/main/java/landmarks/BooksteinFromLandmarks.java
src-plugins/VIB-lib/src/main/java/landmarks/FineTuneProgressListener.java
src-plugins/VIB-lib/src/main/java/landmarks/FineTuneThread.java
src-plugins/VIB-lib/src/main/java/landmarks/NamePoints.java
src-plugins/VIB-lib/src/main/java/landmarks/NamedPointSet.java
src-plugins/VIB-lib/src/main/java/landmarks/NamedPointWorld.java
src-plugins/VIB-lib/src/main/java/landmarks/ProgressCanvas.java
src-plugins/VIB-lib/src/main/java/landmarks/ProgressWindow.java
src-plugins/VIB-lib/src/main/java/landmarks/RegistrationResult.java
src-plugins/VIB-lib/src/main/java/landmarks/RigidFromLandmarks.java
src-plugins/VIB-lib/src/main/java/landmarks/TransformationAttempt.java
src-plugins/VIB-lib/src/main/java/leica/LeicaSPReader.java
src-plugins/VIB-lib/src/main/java/math3d/Bookstein.java
src-plugins/VIB-lib/src/main/java/math3d/Eigensystem2x2Double.java
src-plugins/VIB-lib/src/main/java/math3d/Eigensystem2x2Float.java
src-plugins/VIB-lib/src/main/java/math3d/Eigensystem3x3Double.java
src-plugins/VIB-lib/src/main/java/math3d/Eigensystem3x3Float.java
src-plugins/VIB-lib/src/main/java/math3d/FastMatrixN.java
src-plugins/VIB-lib/src/main/java/math3d/FloatMatrixN.java
src-plugins/VIB-lib/src/main/java/math3d/JacobiDouble.java
src-plugins/VIB-lib/src/main/java/math3d/JacobiFloat.java
src-plugins/VIB-lib/src/main/java/math3d/Line.java
src-plugins/VIB-lib/src/main/java/math3d/NormalEstimator.java
src-plugins/VIB-lib/src/main/java/math3d/Plane.java
src-plugins/VIB-lib/src/main/java/math3d/Point3d.java
src-plugins/VIB-lib/src/main/java/math3d/Tetrahedron.java
src-plugins/VIB-lib/src/main/java/math3d/TransformIO.java
src-plugins/VIB-lib/src/main/java/math3d/Triangle.java
src-plugins/VIB-lib/src/main/java/nrrd/NrrdHeader.java
src-plugins/VIB-lib/src/main/java/nrrd/NrrdInfo.java
src-plugins/VIB-lib/src/main/java/oldsegmenters/AutoLabeller.java
src-plugins/VIB-lib/src/main/java/oldsegmenters/AutoLabellerNaive.java
src-plugins/VIB-lib/src/main/java/oldsegmenters/LabelBinaryOps.java
src-plugins/VIB-lib/src/main/java/oldsegmenters/SegmentatorModel.java
src-plugins/VIB-lib/src/main/java/oldsegmenters/Utils.java
src-plugins/VIB-lib/src/main/java/process3d/Convolve3d.java
src-plugins/VIB-lib/src/main/java/process3d/DistanceTransform3D.java
src-plugins/VIB-lib/src/main/java/process3d/FindMinima.java
src-plugins/VIB-lib/src/main/java/process3d/Gradient.java
src-plugins/VIB-lib/src/main/java/process3d/MinMaxMedian.java
src-plugins/VIB-lib/src/main/java/process3d/Rebin.java
src-plugins/VIB-lib/src/main/java/process3d/Smooth.java
src-plugins/VIB-lib/src/main/java/stacks/PaneOwner.java
src-plugins/VIB-lib/src/main/java/stacks/ThreePaneContainer.java
src-plugins/VIB-lib/src/main/java/stacks/ThreePaneCrop.java
src-plugins/VIB-lib/src/main/java/stacks/ThreePaneCropCanvas.java
src-plugins/VIB-lib/src/main/java/stacks/ThreePanes.java
src-plugins/VIB-lib/src/main/java/stacks/ThreePanesCanvas.java
src-plugins/VIB-lib/src/main/java/util/Arrow.java
src-plugins/VIB-lib/src/main/java/util/ArrowDisplayer.java
src-plugins/VIB-lib/src/main/java/util/BatchOpener.java
src-plugins/VIB-lib/src/main/java/util/Bresenham3D.java
src-plugins/VIB-lib/src/main/java/util/CMTKTransformation.java
src-plugins/VIB-lib/src/main/java/util/CombinationGenerator.java
src-plugins/VIB-lib/src/main/java/util/FileAndChannel.java
src-plugins/VIB-lib/src/main/java/util/FileCreation.java
src-plugins/VIB-lib/src/main/java/util/FindConnectedRegions.java
src-plugins/VIB-lib/src/main/java/util/ImageCalculatorRevised.java
src-plugins/VIB-lib/src/main/java/util/LabelFilenameFilter.java
src-plugins/VIB-lib/src/main/java/util/Limits.java
src-plugins/VIB-lib/src/main/java/util/ModelessQuestions.java
src-plugins/VIB-lib/src/main/java/util/OverlayRegistered.java
src-plugins/VIB-lib/src/main/java/util/Penalty.java
src-plugins/VIB-lib/src/main/java/util/RGBToLuminance.java
src-plugins/VIB-lib/src/main/java/util/RohlfingSBA.java
src-plugins/VIB-lib/src/main/java/util/StupidLog.java
src-plugins/VIB-lib/src/main/java/util/WindowHelpers.java
src-plugins/VIB-lib/src/main/java/util/XMLFunctions.java
src-plugins/VIB-lib/src/main/java/util/opencsv/CSVReader.java
src-plugins/VIB-lib/src/main/java/util/opencsv/CSVWriter.java
src-plugins/VIB-lib/src/main/java/vib/BenesNamedPoint.java
src-plugins/VIB-lib/src/main/java/vib/BilateralFilter.java
src-plugins/VIB-lib/src/main/java/vib/BinaryInterpolator.java
src-plugins/VIB-lib/src/main/java/vib/DiffusionInterpol2.java
src-plugins/VIB-lib/src/main/java/vib/ElasticTransformedImage.java
src-plugins/VIB-lib/src/main/java/vib/FastMatrix.java
src-plugins/VIB-lib/src/main/java/vib/FloatMatrix.java
src-plugins/VIB-lib/src/main/java/vib/InterpolatedImage.java
src-plugins/VIB-lib/src/main/java/vib/MaxEntHistogram.java
src-plugins/VIB-lib/src/main/java/vib/NaiveResampler.java
src-plugins/VIB-lib/src/main/java/vib/PointList.java
src-plugins/VIB-lib/src/main/java/vib/RegistrationOptimizer.java
src-plugins/VIB-lib/src/main/java/vib/RigidRegistration.java
src-plugins/VIB-lib/src/main/java/vib/SegmentationViewerCanvas.java
src-plugins/VIB-lib/src/main/java/vib/ShowHistogram.java
src-plugins/VIB-lib/src/main/java/vib/TransformedImage.java
src-plugins/VIB-lib/src/main/java/vib/VIB.java
src-plugins/VIB-lib/src/main/java/vib/app/FileGroup.java
src-plugins/VIB-lib/src/main/java/vib/app/ImageMetaData.java
src-plugins/VIB-lib/src/main/java/vib/app/Options.java
src-plugins/VIB-lib/src/main/java/vib/app/gui/Console.java
src-plugins/VIB-lib/src/main/java/vib/app/gui/FileGroupDialog.java
src-plugins/VIB-lib/src/main/java/vib/app/gui/ProgressIndicator.java
src-plugins/VIB-lib/src/main/java/vib/app/module/AverageBrain.java
src-plugins/VIB-lib/src/main/java/vib/app/module/CenterTransformation.java
src-plugins/VIB-lib/src/main/java/vib/app/module/EndModule.java
src-plugins/VIB-lib/src/main/java/vib/app/module/GreyTransformation.java
src-plugins/VIB-lib/src/main/java/vib/app/module/Label.java
src-plugins/VIB-lib/src/main/java/vib/app/module/LabelCenterTransformation.java
src-plugins/VIB-lib/src/main/java/vib/app/module/LabelDiffusionTransformation.java
src-plugins/VIB-lib/src/main/java/vib/app/module/Module.java
src-plugins/VIB-lib/src/main/java/vib/app/module/ModuleListener.java
src-plugins/VIB-lib/src/main/java/vib/app/module/Resample.java
src-plugins/VIB-lib/src/main/java/vib/app/module/ResampleLabels.java
src-plugins/VIB-lib/src/main/java/vib/app/module/Show.java
src-plugins/VIB-lib/src/main/java/vib/app/module/SplitChannels.java
src-plugins/VIB-lib/src/main/java/vib/app/module/State.java
src-plugins/VIB-lib/src/main/java/vib/app/module/TissueStatistics.java
src-plugins/VIB-lib/src/main/java/vib/app/module/TransformImages.java
src-plugins/VIB-lib/src/main/java/vib/edge/CircleIterators.java
src-plugins/VIB-lib/src/main/java/vib/edge/SphereIterators.java
src-plugins/VIB-lib/src/main/java/vib/oldregistration/RegistrationAlgorithm.java
src-plugins/VIB-lib/src/main/java/vib/segment/Border.java
src-plugins/VIB-lib/src/main/java/vib/segment/CustomCanvas.java
src-plugins/VIB-lib/src/main/java/vib/segment/CustomStackWindow.java
src-plugins/VIB-lib/src/main/java/vib/segment/ImageButton.java
src-plugins/VIB-lib/src/main/java/vib/segment/InfoPanel.java
src-plugins/VIB-lib/src/main/java/vib/segment/MaterialList.java
src-plugins/VIB-lib/src/main/java/vib/segment/SegmentationEditor.java
src-plugins/VIB-lib/src/main/java/vib/segment/Sidebar.java
src-plugins/VIB-lib/src/main/java/vib/segment/Thresholder.java
src-plugins/VIB-lib/src/main/java/vib/transforms/BooksteinTransform.java
src-plugins/VIB-lib/src/main/java/vib/transforms/BoundsInclusive.java
src-plugins/VIB-lib/src/main/java/vib/transforms/FastMatrixTransform.java
src-plugins/VIB-lib/src/main/java/vib/transforms/OrderedTransformations.java
src-plugins/VIB-lib/src/main/java/vib/transforms/Threshold.java
src-plugins/VIB-lib/src/main/java/vib/transforms/Transform.java
src-plugins/VIB-lib/src/main/java/video/VideoStack.java
src-plugins/VIB-lib/src/main/resources/stacks/COPYING
src-plugins/VIB-lib/src/main/resources/stacks/README
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconArrow.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconBlowTool.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconBrush-10px.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconBrush-15px.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconBrush-1px.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconBrush-3px.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconBrush-5px.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconBrush-7px.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconBrush.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconClose.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconCrossHair.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconInterpolate.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconLasso.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconLetterC.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconLetterR.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconMagicWand.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconMinus.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconOpen.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconPlus.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconPropagatingContour.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconSmooth.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconStepBack.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconStepForward.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconThreshold.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconZoomMinus.png
src-plugins/VIB-lib/src/main/resources/vib/segment/icons/iconZoomPlus.png
src-plugins/VIB-lib/src/main/resources/vib/segment/materials/CompactStandard
src-plugins/VIB-lib/src/main/resources/vib/vib-imagej.svg
src-plugins/VIB-lib/src/test/java/distance/BaseOfTests.java
src-plugins/VIB-lib/src/test/java/distance/TestCorrelation.java
src-plugins/VIB-lib/src/test/java/distance/TestEuclidean.java
src-plugins/VIB-lib/src/test/java/distance/TestMutualInformation.java
src-plugins/VIB-lib/src/test/java/landmarks/TestLoading.java
src-plugins/VIB-lib/src/test/java/math3d/TestEigenvalueDecompositions.java
src-plugins/VIB-lib/src/test/java/util/TestFindConnectedRegions.java
src-plugins/VIB-lib/src/test/java/util/TestPenalty.java
src-plugins/VIB-lib/src/test/java/vib/TestFastMatrix.java
src-plugins/VIB-lib/src/test/java/vib/TestRigidRegistration.java
src-plugins/VIB_/.factorypath
src-plugins/VIB_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/VIB_/TODO
src-plugins/VIB_/pom.xml
src-plugins/VIB_/src/main/java/Align_Image.java
src-plugins/VIB_/src/main/java/AmiraMeshReader_.java
src-plugins/VIB_/src/main/java/AmiraMeshWriter_.java
src-plugins/VIB_/src/main/java/AmiraTableWriter_.java
src-plugins/VIB_/src/main/java/Average_Color.java
src-plugins/VIB_/src/main/java/Bilateral_Filter.java
src-plugins/VIB_/src/main/java/Biorad_Reader.java
src-plugins/VIB_/src/main/java/Biorad_Writer.java
src-plugins/VIB_/src/main/java/CollectGarbage_.java
src-plugins/VIB_/src/main/java/Compute_Curvatures.java
src-plugins/VIB_/src/main/java/CropEditor_.java
src-plugins/VIB_/src/main/java/Delaunay_Voronoi.java
src-plugins/VIB_/src/main/java/Despeckle_.java
src-plugins/VIB_/src/main/java/Fill_holes.java
src-plugins/VIB_/src/main/java/FindIt_.java
src-plugins/VIB_/src/main/java/Implicit_Interpolate_Binary.java
src-plugins/VIB_/src/main/java/KD_Cartoon.java
src-plugins/VIB_/src/main/java/MC_Test.java
src-plugins/VIB_/src/main/java/Menu_Font.java
src-plugins/VIB_/src/main/java/Moving_Least_Squares.java
src-plugins/VIB_/src/main/java/Psychomorph_TEM_Reader.java
src-plugins/VIB_/src/main/java/RGB_to_CIELAB.java
src-plugins/VIB_/src/main/java/ROIBrush_.java
src-plugins/VIB_/src/main/java/ROI_3D.java
src-plugins/VIB_/src/main/java/Replace_Value.java
src-plugins/VIB_/src/main/java/Reslice_Z.java
src-plugins/VIB_/src/main/java/Rohlfing_SBA.java
src-plugins/VIB_/src/main/java/Scrollable_StackWindow.java
src-plugins/VIB_/src/main/java/Seam_Remover.java
src-plugins/VIB_/src/main/java/Segmentation_Editor.java
src-plugins/VIB_/src/main/java/ShowAmiraSurface_.java
src-plugins/VIB_/src/main/java/Show_Label_Centers.java
src-plugins/VIB_/src/main/java/Test_Java3D.java
src-plugins/VIB_/src/main/java/Triangle_Algorithm.java
src-plugins/VIB_/src/main/java/Two_Point_Correlation.java
src-plugins/VIB_/src/main/java/VIB_Protocol.java
src-plugins/VIB_/src/main/java/Visual_Grep.java
src-plugins/VIB_/src/main/java/features/Hessian_CP_Measures.java
src-plugins/VIB_/src/main/java/features/Sigma_Palette.java
src-plugins/VIB_/src/main/java/features/Surfaceness_.java
src-plugins/VIB_/src/main/java/features/TestComputeCurvatures_.java
src-plugins/VIB_/src/main/java/features/Tubeness_.java
src-plugins/VIB_/src/main/java/landmarks/Affine_From_Landmarks.java
src-plugins/VIB_/src/main/java/landmarks/Bookstein_From_Landmarks.java
src-plugins/VIB_/src/main/java/landmarks/Name_Points.java
src-plugins/VIB_/src/main/java/landmarks/Rigid_From_Landmarks.java
src-plugins/VIB_/src/main/java/leica/Leica_SP_Reader.java
src-plugins/VIB_/src/main/java/leica/Leica_SP_Writer.java
src-plugins/VIB_/src/main/java/marchingcubes/ExportMesh_.java
src-plugins/VIB_/src/main/java/math3d/Transform_IO.java
src-plugins/VIB_/src/main/java/oldsegmenters/LabelBrush_.java
src-plugins/VIB_/src/main/java/oldsegmenters/LabelInterpolator_.java
src-plugins/VIB_/src/main/java/oldsegmenters/LabelThresholder_.java
src-plugins/VIB_/src/main/java/oldsegmenters/Segmentator_.java
src-plugins/VIB_/src/main/java/oldsegmenters/Segmenter_.java
src-plugins/VIB_/src/main/java/process3d/Convolve_3d.java
src-plugins/VIB_/src/main/java/process3d/Dilate_.java
src-plugins/VIB_/src/main/java/process3d/Distance_Transform_3D.java
src-plugins/VIB_/src/main/java/process3d/Erode_.java
src-plugins/VIB_/src/main/java/process3d/FFT_.java
src-plugins/VIB_/src/main/java/process3d/Find_Minima.java
src-plugins/VIB_/src/main/java/process3d/Flood_Fill.java
src-plugins/VIB_/src/main/java/process3d/Gradient_.java
src-plugins/VIB_/src/main/java/process3d/Harris_Corner_Detector.java
src-plugins/VIB_/src/main/java/process3d/IFT_.java
src-plugins/VIB_/src/main/java/process3d/Laplace_.java
src-plugins/VIB_/src/main/java/process3d/Maximum_.java
src-plugins/VIB_/src/main/java/process3d/Median_.java
src-plugins/VIB_/src/main/java/process3d/Minimum_.java
src-plugins/VIB_/src/main/java/process3d/Particle_Analyzer_3D.java
src-plugins/VIB_/src/main/java/process3d/Plot_Dots.java
src-plugins/VIB_/src/main/java/process3d/Rebin_.java
src-plugins/VIB_/src/main/java/stacks/ThreePaneContainer_.java
src-plugins/VIB_/src/main/java/stacks/ThreePanes_.java
src-plugins/VIB_/src/main/java/stacks/Three_Pane_Crop.java
src-plugins/VIB_/src/main/java/stacks/Unpack_To_PNG.java
src-plugins/VIB_/src/main/java/textureByRef/Texture_By_Ref.java
src-plugins/VIB_/src/main/java/textureByRef/Texture_By_Ref_col.java
src-plugins/VIB_/src/main/java/textureByRef/Volume_Editor.java
src-plugins/VIB_/src/main/java/util/Average_Torsten_Results.java
src-plugins/VIB_/src/main/java/util/Count_Labels.java
src-plugins/VIB_/src/main/java/util/Exposure_Blend_Two_Stacks.java
src-plugins/VIB_/src/main/java/util/Find_Connected_Regions.java
src-plugins/VIB_/src/main/java/util/Histogram_2D.java
src-plugins/VIB_/src/main/java/util/Just_Certain_Labels.java
src-plugins/VIB_/src/main/java/util/Mask_Of_Nearby_Points.java
src-plugins/VIB_/src/main/java/util/Meshes_From_Label_File.java
src-plugins/VIB_/src/main/java/util/Overlay_Registered.java
src-plugins/VIB_/src/main/java/util/Quantile_Based_Normalization.java
src-plugins/VIB_/src/main/java/util/RGB_to_Luminance.java
src-plugins/VIB_/src/main/java/vib/AugmentedLandmarkWarp_.java
src-plugins/VIB_/src/main/java/vib/AverageBrain_.java
src-plugins/VIB_/src/main/java/vib/Average_Images.java
src-plugins/VIB_/src/main/java/vib/BatchLog_.java
src-plugins/VIB_/src/main/java/vib/Center_Transformation.java
src-plugins/VIB_/src/main/java/vib/Deformable_Registration.java
src-plugins/VIB_/src/main/java/vib/DiffusionInterpol2_.java
src-plugins/VIB_/src/main/java/vib/EdgeDetectors_.java
src-plugins/VIB_/src/main/java/vib/EditAmiraParameters_.java
src-plugins/VIB_/src/main/java/vib/ElasticTransform_.java
src-plugins/VIB_/src/main/java/vib/Extract_Surface.java
src-plugins/VIB_/src/main/java/vib/Fit_Sphere.java
src-plugins/VIB_/src/main/java/vib/IDT_Interpolate_Binary.java
src-plugins/VIB_/src/main/java/vib/LocalRigidRegistration_.java
src-plugins/VIB_/src/main/java/vib/Local_Threshold.java
src-plugins/VIB_/src/main/java/vib/MaxEntQuantization_.java
src-plugins/VIB_/src/main/java/vib/Points_Dialog.java
src-plugins/VIB_/src/main/java/vib/Raster_Rigid.java
src-plugins/VIB_/src/main/java/vib/Relabel_.java
src-plugins/VIB_/src/main/java/vib/Resample_.java
src-plugins/VIB_/src/main/java/vib/RigidRegistration_.java
src-plugins/VIB_/src/main/java/vib/SegmentationViewer_.java
src-plugins/VIB_/src/main/java/vib/Show_centers.java
src-plugins/VIB_/src/main/java/vib/TissueStatistics_.java
src-plugins/VIB_/src/main/java/vib/edge/Dirichlet_Edge.java
src-plugins/VIB_/src/main/java/vib/oldregistration/PCA_Registration.java
src-plugins/VIB_/src/main/java/video/Edit_Video.java
src-plugins/VIB_/src/main/resources/ImageJ3DMacro.txt
src-plugins/VIB_/src/main/resources/LICENSE.VIB
src-plugins/VIB_/src/main/resources/README.VIB
src-plugins/VIB_/src/main/resources/plugins.config
src-plugins/Vaa3d_Reader/pom.xml
src-plugins/Vaa3d_Reader/src/main/java/org/janelia/vaa3d/reader/Pbd16InputStream.java
src-plugins/Vaa3d_Reader/src/main/java/org/janelia/vaa3d/reader/Pbd8InputStream.java
src-plugins/Vaa3d_Reader/src/main/java/org/janelia/vaa3d/reader/PbdInputStream.java
src-plugins/Vaa3d_Reader/src/main/java/org/janelia/vaa3d/reader/TestReader.java
src-plugins/Vaa3d_Reader/src/main/java/org/janelia/vaa3d/reader/V3dRawImageStream.java
src-plugins/Vaa3d_Reader/src/main/java/org/janelia/vaa3d/reader/Vaa3d_Reader.java
src-plugins/Vaa3d_Reader/src/main/resources/plugins.config
src-plugins/Vaa3d_Reader/src/test/resources/123stack16.tif
src-plugins/Vaa3d_Reader/src/test/resources/123stack16.v3dpbd
src-plugins/Vaa3d_Reader/src/test/resources/123stack16.v3draw
src-plugins/Vaa3d_Reader/src/test/resources/test_strip8.tif
src-plugins/Vaa3d_Reader/src/test/resources/test_strip8.v3dpbd
src-plugins/Vaa3d_Reader/src/test/resources/test_strip8.v3draw
src-plugins/Video_Editing/.factorypath
src-plugins/Video_Editing/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Video_Editing/pom.xml
src-plugins/Video_Editing/src/main/java/video2/Add_Empty_Frame.java
src-plugins/Video_Editing/src/main/java/video2/Delete_Frame.java
src-plugins/Video_Editing/src/main/java/video2/Draw_Roi.java
src-plugins/Video_Editing/src/main/java/video2/Duplicate_Frame.java
src-plugins/Video_Editing/src/main/java/video2/Insert_Stack.java
src-plugins/Video_Editing/src/main/java/video2/Make_Transition.java
src-plugins/Video_Editing/src/main/java/video2/Move_Roi.java
src-plugins/Video_Editing/src/main/java/video2/New_Video.java
src-plugins/Video_Editing/src/main/java/video2/Open_Video.java
src-plugins/Video_Editing/src/main/java/video2/WritableVirtualStack.java
src-plugins/Video_Editing/src/main/resources/plugins.config
src-plugins/View5D_/.factorypath
src-plugins/View5D_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/View5D_/Makefile.old
src-plugins/View5D_/javacApplet
src-plugins/View5D_/javacImageJ
src-plugins/View5D_/pom.xml
src-plugins/View5D_/src/main/java/view5d/AGenericDialog.java
src-plugins/View5D_/src/main/java/view5d/ANGenericDialog.java
src-plugins/View5D_/src/main/java/view5d/APoint.java
src-plugins/View5D_/src/main/java/view5d/ASlice.java
src-plugins/View5D_/src/main/java/view5d/AlternateViewer.java
src-plugins/View5D_/src/main/java/view5d/AnElement.java
src-plugins/View5D_/src/main/java/view5d/Bundle.java
src-plugins/View5D_/src/main/java/view5d/ByteElement.java
src-plugins/View5D_/src/main/java/view5d/ComplexElement.java
src-plugins/View5D_/src/main/java/view5d/DoubleElement.java
src-plugins/View5D_/src/main/java/view5d/FloatElement.java
src-plugins/View5D_/src/main/java/view5d/ImageCanvas.java
src-plugins/View5D_/src/main/java/view5d/ImageErr.java
src-plugins/View5D_/src/main/java/view5d/ImgPanel.java
src-plugins/View5D_/src/main/java/view5d/IntegerElement.java
src-plugins/View5D_/src/main/java/view5d/MarkerList.java
src-plugins/View5D_/src/main/java/view5d/MarkerLists.java
src-plugins/View5D_/src/main/java/view5d/My3DData.java
src-plugins/View5D_/src/main/java/view5d/MyMenuProcessor.java
src-plugins/View5D_/src/main/java/view5d/OneElement.java
src-plugins/View5D_/src/main/java/view5d/PixelDisplay.java
src-plugins/View5D_/src/main/java/view5d/PlaneROI.java
src-plugins/View5D_/src/main/java/view5d/PlotInfo.java
src-plugins/View5D_/src/main/java/view5d/PolyROI.java
src-plugins/View5D_/src/main/java/view5d/PositionLabel.java
src-plugins/View5D_/src/main/java/view5d/ROI.java
src-plugins/View5D_/src/main/java/view5d/RectROI.java
src-plugins/View5D_/src/main/java/view5d/ShortElement.java
src-plugins/View5D_/src/main/java/view5d/TaggedCheck.java
src-plugins/View5D_/src/main/java/view5d/TaggedChoice.java
src-plugins/View5D_/src/main/java/view5d/TaggedComponent.java
src-plugins/View5D_/src/main/java/view5d/TaggedDouble.java
src-plugins/View5D_/src/main/java/view5d/TaggedMessage.java
src-plugins/View5D_/src/main/java/view5d/TaggedText.java
src-plugins/View5D_/src/main/java/view5d/View5D.java
src-plugins/View5D_/src/main/java/view5d/View5D_.java
src-plugins/View5D_/src/main/java/view5d/ZeroElement.java
src-plugins/View5D_/src/main/resources/COPYING
src-plugins/View5D_/src/main/resources/plugins.config
src-plugins/View5D_/view5d.m
src-plugins/View5D_/view5dAddElem.m
src-plugins/Volume_Calculator/pom.xml
src-plugins/Volume_Calculator/src/main/java/volumeCalculator/AnalyzedGraph.java
src-plugins/Volume_Calculator/src/main/java/volumeCalculator/CustomVolumeBehavior2.java
src-plugins/Volume_Calculator/src/main/java/volumeCalculator/GraphContentNode.java
src-plugins/Volume_Calculator/src/main/java/volumeCalculator/UserData.java
src-plugins/Volume_Calculator/src/main/java/volumeCalculator/Volume_Calculator.java
src-plugins/Volume_Calculator/src/main/java/volumeCalculator/Volumes.java
src-plugins/Volume_Calculator/src/main/java/volumeCalculator/VolumesPanel.java
src-plugins/Volume_Calculator/src/main/resources/plugins.config
src-plugins/Volume_Viewer/.factorypath
src-plugins/Volume_Viewer/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/Volume_Viewer/pom.xml
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/Control.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/Cube.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/Gradient.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/Gui.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/ImageRegion.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/Interpolation.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/Line.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/LookupTable.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/Pic.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/TFalpha1.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/TFalpha2.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/TFalpha3.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/TFalpha4.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/TFrgb.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/TextField.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/Transform.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/Volume.java
src-plugins/Volume_Viewer/src/main/java/fiji/plugin/volumeviewer/Volume_Viewer.java
src-plugins/Volume_Viewer/src/main/resources/plugins.config
src-plugins/bUnwarpJ_/.factorypath
src-plugins/bUnwarpJ_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/bUnwarpJ_/pom.xml
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/BSplineModel.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/ClearAll.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/Credits.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/CumulativeQueue.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/FinalAction.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/IODialog.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/MainDialog.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/Mask.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/MathTools.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/MiscTools.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/Param.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/PointAction.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/PointHandler.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/PointToolbar.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/ProgressBar.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/Transformation.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/bUnwarpJ_.java
src-plugins/bUnwarpJ_/src/main/java/bunwarpj/package-info.java
src-plugins/bUnwarpJ_/src/main/java/math/BSpline.java
src-plugins/bUnwarpJ_/src/main/resources/plugins.config
src-plugins/blockmatching_/.factorypath
src-plugins/blockmatching_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/blockmatching_/pom.xml
src-plugins/blockmatching_/src/main/java/mpicbg/ij/plugin/AbstractBlockMatching.java
src-plugins/blockmatching_/src/main/java/mpicbg/ij/plugin/BlockMatching_ExtractPoinRoi.java
src-plugins/blockmatching_/src/main/java/mpicbg/ij/plugin/BlockMatching_TestParameters.java
src-plugins/blockmatching_/src/main/resources/plugins.config
src-plugins/fake/.factorypath
src-plugins/fake/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/fake/DESIGN
src-plugins/fake/TODO
src-plugins/fake/pom.xml
src-plugins/fake/src/main/java/fiji/build/All.java
src-plugins/fake/src/main/java/fiji/build/ByteCodeAnalyzer.java
src-plugins/fake/src/main/java/fiji/build/CompileCProgram.java
src-plugins/fake/src/main/java/fiji/build/CompileClass.java
src-plugins/fake/src/main/java/fiji/build/CompileJar.java
src-plugins/fake/src/main/java/fiji/build/CompileNativeLibrary.java
src-plugins/fake/src/main/java/fiji/build/CopyJar.java
src-plugins/fake/src/main/java/fiji/build/ExecuteProgram.java
src-plugins/fake/src/main/java/fiji/build/Fake.java
src-plugins/fake/src/main/java/fiji/build/FakeException.java
src-plugins/fake/src/main/java/fiji/build/GlobFilter.java
src-plugins/fake/src/main/java/fiji/build/MiniMaven.java
src-plugins/fake/src/main/java/fiji/build/MultiIterable.java
src-plugins/fake/src/main/java/fiji/build/ObsoleteClassFiles.java
src-plugins/fake/src/main/java/fiji/build/ParallelMaker.java
src-plugins/fake/src/main/java/fiji/build/Parser.java
src-plugins/fake/src/main/java/fiji/build/Rule.java
src-plugins/fake/src/main/java/fiji/build/Special.java
src-plugins/fake/src/main/java/fiji/build/StreamDumper.java
src-plugins/fake/src/main/java/fiji/build/SubFake.java
src-plugins/fake/src/main/java/fiji/build/Util.java
src-plugins/fake/src/main/resources/README
src-plugins/fiji-compat/.factorypath
src-plugins/fiji-compat/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/fiji-compat/pom.xml
src-plugins/fiji-compat/src/main/java/fiji/CheckClassVersions.java
src-plugins/fiji-compat/src/main/java/fiji/Compile_and_Run.java
src-plugins/fiji-compat/src/main/java/fiji/FijiClassLoader.java
src-plugins/fiji-compat/src/main/java/fiji/FijiTools.java
src-plugins/fiji-compat/src/main/java/fiji/IJ1LogService.java
src-plugins/fiji-compat/src/main/java/fiji/IJ1Patcher.java
src-plugins/fiji-compat/src/main/java/fiji/IJ1StatusService.java
src-plugins/fiji-compat/src/main/java/fiji/IJ_Alt_Key_Listener.java
src-plugins/fiji-compat/src/main/java/fiji/InspectJar.java
src-plugins/fiji-compat/src/main/java/fiji/JavassistHelper.java
src-plugins/fiji-compat/src/main/java/fiji/Main.java
src-plugins/fiji-compat/src/main/java/fiji/MainClassForDebugging.java
src-plugins/fiji-compat/src/main/java/fiji/Memory.java
src-plugins/fiji-compat/src/main/java/fiji/MemoryProfiler.java
src-plugins/fiji-compat/src/main/java/fiji/MenuRefresher.java
src-plugins/fiji-compat/src/main/java/fiji/OtherInstance.java
src-plugins/fiji-compat/src/main/java/fiji/PerformanceProfiler.java
src-plugins/fiji-compat/src/main/java/fiji/PlugInInstaller.java
src-plugins/fiji-compat/src/main/java/fiji/SampleImageLoader.java
src-plugins/fiji-compat/src/main/java/fiji/SetIcon.java
src-plugins/fiji-compat/src/main/java/fiji/SimpleExecuter.java
src-plugins/fiji-compat/src/main/java/fiji/User_Plugins.java
src-plugins/fiji-compat/src/main/java/fiji/ZLibAnalyzer.java
src-plugins/fiji-compat/src/main/java/fiji/gui/FileDialogDecorator.java
src-plugins/fiji-compat/src/main/java/fiji/gui/InvokeLater.java
src-plugins/fiji-compat/src/main/java/fiji/gui/JFileChooserDecorator.java
src-plugins/fiji-compat/src/main/resources/icon.png
src-plugins/fiji-compat/src/test/java/Another_Bare_PlugIn.java
src-plugins/fiji-compat/src/test/java/BarePluginsIT.java
src-plugins/fiji-compat/src/test/java/Bare_PlugIn.java
src-plugins/fiji-compat/src/test/java/test/Dependency.java
src-plugins/fiji-compat/src/test/java/test/Missing_Dependency.java
src-plugins/fiji-compat/src/test/java/test/Test_PlugIn.java
src-plugins/fiji-lib/.factorypath
src-plugins/fiji-lib/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/fiji-lib/pom.xml
src-plugins/fiji-lib/src/main/java/fiji/Debug.java
src-plugins/fiji-lib/src/main/java/fiji/JNI.java
src-plugins/fiji-lib/src/main/java/fiji/debugging/Object_Inspector.java
src-plugins/fiji-lib/src/main/java/fiji/statistics/RoiStatistics.java
src-plugins/fiji-lib/src/main/java/fiji/tool/AbstractTool.java
src-plugins/fiji-lib/src/main/java/fiji/tool/AbstractTrackingTool.java
src-plugins/fiji-lib/src/main/java/fiji/tool/SliceListener.java
src-plugins/fiji-lib/src/main/java/fiji/tool/SliceObserver.java
src-plugins/fiji-lib/src/main/java/fiji/tool/ToolToggleListener.java
src-plugins/fiji-lib/src/main/java/fiji/tool/ToolWithOptions.java
src-plugins/fiji-lib/src/main/java/fiji/util/ArrayBase.java
src-plugins/fiji-lib/src/main/java/fiji/util/DoubleArray.java
src-plugins/fiji-lib/src/main/java/fiji/util/FloatArray.java
src-plugins/fiji-lib/src/main/java/fiji/util/IntArray.java
src-plugins/fiji-lib/src/main/java/fiji/util/Levenshtein.java
src-plugins/fiji-lib/src/main/java/fiji/util/MenuItemDiverter.java
src-plugins/fiji-lib/src/main/java/fiji/util/MenuItemHelper.java
src-plugins/fiji-lib/src/main/java/fiji/util/NumberParser.java
src-plugins/fiji-lib/src/main/java/fiji/util/SplitString.java
src-plugins/fiji-lib/src/main/java/fiji/util/TicToc.java
src-plugins/fiji-lib/src/main/java/fiji/util/gui/AbstractAnnotation.java
src-plugins/fiji-lib/src/main/java/fiji/util/gui/CommandFinderBase.java
src-plugins/fiji-lib/src/main/java/fiji/util/gui/GenericDialogPlus.java
src-plugins/fiji-lib/src/main/java/fiji/util/gui/JFrameCommandFinder.java
src-plugins/fiji-lib/src/main/java/fiji/util/gui/JImagePanel.java
src-plugins/fiji-lib/src/main/java/fiji/util/gui/OverlayedImageCanvas.java
src-plugins/fiji-lib/src/main/java/ij/gui/ShapeRoiHelper.java
src-plugins/fiji-lib/src/main/resources/help-cursor.gif
src-plugins/fiji-scripting/.factorypath
src-plugins/fiji-scripting/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/fiji-scripting/pom.xml
src-plugins/fiji-scripting/src/main/java/common/AbstractInterpreter.java
src-plugins/fiji-scripting/src/main/java/common/RefreshScripts.java
src-plugins/fiji-scripting/src/main/java/common/ScriptRunner.java
src-plugins/imagescience/.factorypath
src-plugins/imagescience/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/imagescience/pom.xml
src-plugins/imagescience/src/main/java/imagescience/array/ByteArray.java
src-plugins/imagescience/src/main/java/imagescience/array/DoubleArray.java
src-plugins/imagescience/src/main/java/imagescience/array/FloatArray.java
src-plugins/imagescience/src/main/java/imagescience/array/IntArray.java
src-plugins/imagescience/src/main/java/imagescience/array/LongArray.java
src-plugins/imagescience/src/main/java/imagescience/array/ShortArray.java
src-plugins/imagescience/src/main/java/imagescience/color/Palette.java
src-plugins/imagescience/src/main/java/imagescience/color/Wave2Color.java
src-plugins/imagescience/src/main/java/imagescience/feature/Differentiator.java
src-plugins/imagescience/src/main/java/imagescience/feature/Edges.java
src-plugins/imagescience/src/main/java/imagescience/feature/Hessian.java
src-plugins/imagescience/src/main/java/imagescience/feature/Laplacian.java
src-plugins/imagescience/src/main/java/imagescience/feature/Smoother.java
src-plugins/imagescience/src/main/java/imagescience/feature/Statistics.java
src-plugins/imagescience/src/main/java/imagescience/feature/Structure.java
src-plugins/imagescience/src/main/java/imagescience/fourier/FFT.java
src-plugins/imagescience/src/main/java/imagescience/image/Aspects.java
src-plugins/imagescience/src/main/java/imagescience/image/Axes.java
src-plugins/imagescience/src/main/java/imagescience/image/Borders.java
src-plugins/imagescience/src/main/java/imagescience/image/ByteImage.java
src-plugins/imagescience/src/main/java/imagescience/image/ColorImage.java
src-plugins/imagescience/src/main/java/imagescience/image/Coordinates.java
src-plugins/imagescience/src/main/java/imagescience/image/Dimensions.java
src-plugins/imagescience/src/main/java/imagescience/image/FloatImage.java
src-plugins/imagescience/src/main/java/imagescience/image/Image.java
src-plugins/imagescience/src/main/java/imagescience/image/ShortImage.java
src-plugins/imagescience/src/main/java/imagescience/random/BinomialGenerator.java
src-plugins/imagescience/src/main/java/imagescience/random/ExponentialGenerator.java
src-plugins/imagescience/src/main/java/imagescience/random/GammaGenerator.java
src-plugins/imagescience/src/main/java/imagescience/random/GaussianGenerator.java
src-plugins/imagescience/src/main/java/imagescience/random/PoissonGenerator.java
src-plugins/imagescience/src/main/java/imagescience/random/RandomGenerator.java
src-plugins/imagescience/src/main/java/imagescience/random/Randomizer.java
src-plugins/imagescience/src/main/java/imagescience/random/UniformGenerator.java
src-plugins/imagescience/src/main/java/imagescience/segment/Extremizer.java
src-plugins/imagescience/src/main/java/imagescience/segment/Thresholder.java
src-plugins/imagescience/src/main/java/imagescience/segment/ZeroCrosser.java
src-plugins/imagescience/src/main/java/imagescience/shape/Bounds.java
src-plugins/imagescience/src/main/java/imagescience/shape/Circle.java
src-plugins/imagescience/src/main/java/imagescience/shape/Ellipse.java
src-plugins/imagescience/src/main/java/imagescience/shape/Point.java
src-plugins/imagescience/src/main/java/imagescience/shape/Polygon.java
src-plugins/imagescience/src/main/java/imagescience/shape/Rectangle.java
src-plugins/imagescience/src/main/java/imagescience/shape/Region.java
src-plugins/imagescience/src/main/java/imagescience/shape/Shape.java
src-plugins/imagescience/src/main/java/imagescience/shape/Spline.java
src-plugins/imagescience/src/main/java/imagescience/shape/Square.java
src-plugins/imagescience/src/main/java/imagescience/transform/Affine.java
src-plugins/imagescience/src/main/java/imagescience/transform/Crop.java
src-plugins/imagescience/src/main/java/imagescience/transform/Embed.java
src-plugins/imagescience/src/main/java/imagescience/transform/Mirror.java
src-plugins/imagescience/src/main/java/imagescience/transform/Prefilter.java
src-plugins/imagescience/src/main/java/imagescience/transform/Rotate.java
src-plugins/imagescience/src/main/java/imagescience/transform/Scale.java
src-plugins/imagescience/src/main/java/imagescience/transform/Transform.java
src-plugins/imagescience/src/main/java/imagescience/transform/Translate.java
src-plugins/imagescience/src/main/java/imagescience/transform/Turn.java
src-plugins/imagescience/src/main/java/imagescience/utility/FMath.java
src-plugins/imagescience/src/main/java/imagescience/utility/Formatter.java
src-plugins/imagescience/src/main/java/imagescience/utility/I5DResource.java
src-plugins/imagescience/src/main/java/imagescience/utility/ImageScience.java
src-plugins/imagescience/src/main/java/imagescience/utility/Messenger.java
src-plugins/imagescience/src/main/java/imagescience/utility/MouseCursor.java
src-plugins/imagescience/src/main/java/imagescience/utility/Progressor.java
src-plugins/imagescience/src/main/java/imagescience/utility/Timer.java
src-plugins/imagescience/src/main/java/imagescience/utility/VTKResource.java
src-plugins/imagescience/src/main/resources/copyright.txt
src-plugins/imagescience/src/main/resources/versions.txt
src-plugins/imageware/.factorypath
src-plugins/imageware/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/imageware/pom.xml
src-plugins/imageware/src/main/java/imageware/Access.java
src-plugins/imageware/src/main/java/imageware/Buffer.java
src-plugins/imageware/src/main/java/imageware/Builder.java
src-plugins/imageware/src/main/java/imageware/ByteAccess.java
src-plugins/imageware/src/main/java/imageware/ByteBuffer.java
src-plugins/imageware/src/main/java/imageware/BytePointwise.java
src-plugins/imageware/src/main/java/imageware/ByteProcess.java
src-plugins/imageware/src/main/java/imageware/ByteSet.java
src-plugins/imageware/src/main/java/imageware/Convolver.java
src-plugins/imageware/src/main/java/imageware/Display.java
src-plugins/imageware/src/main/java/imageware/DoubleAccess.java
src-plugins/imageware/src/main/java/imageware/DoubleBuffer.java
src-plugins/imageware/src/main/java/imageware/DoublePointwise.java
src-plugins/imageware/src/main/java/imageware/DoubleProcess.java
src-plugins/imageware/src/main/java/imageware/DoubleSet.java
src-plugins/imageware/src/main/java/imageware/FMath.java
src-plugins/imageware/src/main/java/imageware/FloatAccess.java
src-plugins/imageware/src/main/java/imageware/FloatBuffer.java
src-plugins/imageware/src/main/java/imageware/FloatPointwise.java
src-plugins/imageware/src/main/java/imageware/FloatProcess.java
src-plugins/imageware/src/main/java/imageware/FloatSet.java
src-plugins/imageware/src/main/java/imageware/ImageAccess.java
src-plugins/imageware/src/main/java/imageware/ImageWare.java
src-plugins/imageware/src/main/java/imageware/Pointwise.java
src-plugins/imageware/src/main/java/imageware/Process.java
src-plugins/imageware/src/main/java/imageware/ShortAccess.java
src-plugins/imageware/src/main/java/imageware/ShortBuffer.java
src-plugins/imageware/src/main/java/imageware/ShortPointwise.java
src-plugins/imageware/src/main/java/imageware/ShortProcess.java
src-plugins/imageware/src/main/java/imageware/ShortSet.java
src-plugins/javac/.factorypath
src-plugins/javac/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/javac/pom.xml
src-plugins/javac/src/main/java/com/sun/source/tree/AnnotationTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ArrayAccessTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ArrayTypeTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/AssertTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/AssignmentTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/BinaryTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/BlockTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/BreakTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/CaseTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/CatchTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ClassTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/CompilationUnitTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/CompoundAssignmentTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ConditionalExpressionTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ContinueTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/DoWhileLoopTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/EmptyStatementTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/EnhancedForLoopTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ErroneousTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ExpressionStatementTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ExpressionTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ForLoopTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/IdentifierTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/IfTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ImportTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/InstanceOfTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/LabeledStatementTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/LineMap.java
src-plugins/javac/src/main/java/com/sun/source/tree/LiteralTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/MemberSelectTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/MethodInvocationTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/MethodTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ModifiersTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/NewArrayTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/NewClassTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ParameterizedTypeTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ParenthesizedTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/PrimitiveTypeTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ReturnTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/Scope.java
src-plugins/javac/src/main/java/com/sun/source/tree/StatementTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/SwitchTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/SynchronizedTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/ThrowTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/Tree.java
src-plugins/javac/src/main/java/com/sun/source/tree/TreeVisitor.java
src-plugins/javac/src/main/java/com/sun/source/tree/TryTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/TypeCastTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/TypeParameterTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/UnaryTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/VariableTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/WhileLoopTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/WildcardTree.java
src-plugins/javac/src/main/java/com/sun/source/tree/package-info.java
src-plugins/javac/src/main/java/com/sun/source/util/JavacTask.java
src-plugins/javac/src/main/java/com/sun/source/util/SimpleTreeVisitor.java
src-plugins/javac/src/main/java/com/sun/source/util/SourcePositions.java
src-plugins/javac/src/main/java/com/sun/source/util/TaskEvent.java
src-plugins/javac/src/main/java/com/sun/source/util/TaskListener.java
src-plugins/javac/src/main/java/com/sun/source/util/TreePath.java
src-plugins/javac/src/main/java/com/sun/source/util/TreePathScanner.java
src-plugins/javac/src/main/java/com/sun/source/util/TreeScanner.java
src-plugins/javac/src/main/java/com/sun/source/util/Trees.java
src-plugins/javac/src/main/java/com/sun/source/util/package-info.java
src-plugins/javac/src/main/java/com/sun/tools/javac/Launcher.java
src-plugins/javac/src/main/java/com/sun/tools/javac/Main.java
src-plugins/javac/src/main/java/com/sun/tools/javac/Server.java
src-plugins/javac/src/main/java/com/sun/tools/javac/api/JavacScope.java
src-plugins/javac/src/main/java/com/sun/tools/javac/api/JavacTaskImpl.java
src-plugins/javac/src/main/java/com/sun/tools/javac/api/JavacTool.java
src-plugins/javac/src/main/java/com/sun/tools/javac/api/JavacTrees.java
src-plugins/javac/src/main/java/com/sun/tools/javac/api/WrappingJavaFileManager.java
src-plugins/javac/src/main/java/com/sun/tools/javac/code/Attribute.java
src-plugins/javac/src/main/java/com/sun/tools/javac/code/BoundKind.java
src-plugins/javac/src/main/java/com/sun/tools/javac/code/Flags.java
src-plugins/javac/src/main/java/com/sun/tools/javac/code/Kinds.java
src-plugins/javac/src/main/java/com/sun/tools/javac/code/Lint.java
src-plugins/javac/src/main/java/com/sun/tools/javac/code/Scope.java
src-plugins/javac/src/main/java/com/sun/tools/javac/code/Source.java
src-plugins/javac/src/main/java/com/sun/tools/javac/code/Symbol.java
src-plugins/javac/src/main/java/com/sun/tools/javac/code/Symtab.java
src-plugins/javac/src/main/java/com/sun/tools/javac/code/Type.java
src-plugins/javac/src/main/java/com/sun/tools/javac/code/TypeTags.java
src-plugins/javac/src/main/java/com/sun/tools/javac/code/Types.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/Annotate.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/Attr.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/AttrContext.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/AttrContextEnv.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/Check.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/ConstFold.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/Enter.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/Env.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/Flow.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/Infer.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/Lower.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/MemberEnter.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/Resolve.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/Todo.java
src-plugins/javac/src/main/java/com/sun/tools/javac/comp/TransTypes.java
src-plugins/javac/src/main/java/com/sun/tools/javac/file/BaseFileObject.java
src-plugins/javac/src/main/java/com/sun/tools/javac/file/CacheFSInfo.java
src-plugins/javac/src/main/java/com/sun/tools/javac/file/FSInfo.java
src-plugins/javac/src/main/java/com/sun/tools/javac/file/JavacFileManager.java
src-plugins/javac/src/main/java/com/sun/tools/javac/file/Paths.java
src-plugins/javac/src/main/java/com/sun/tools/javac/file/RegularFileObject.java
src-plugins/javac/src/main/java/com/sun/tools/javac/file/RelativePath.java
src-plugins/javac/src/main/java/com/sun/tools/javac/file/SymbolArchive.java
src-plugins/javac/src/main/java/com/sun/tools/javac/file/ZipArchive.java
src-plugins/javac/src/main/java/com/sun/tools/javac/file/ZipFileIndex.java
src-plugins/javac/src/main/java/com/sun/tools/javac/file/ZipFileIndexArchive.java
src-plugins/javac/src/main/java/com/sun/tools/javac/jvm/ByteCodes.java
src-plugins/javac/src/main/java/com/sun/tools/javac/jvm/CRTFlags.java
src-plugins/javac/src/main/java/com/sun/tools/javac/jvm/CRTable.java
src-plugins/javac/src/main/java/com/sun/tools/javac/jvm/ClassFile.java
src-plugins/javac/src/main/java/com/sun/tools/javac/jvm/ClassReader.java
src-plugins/javac/src/main/java/com/sun/tools/javac/jvm/ClassWriter.java
src-plugins/javac/src/main/java/com/sun/tools/javac/jvm/Code.java
src-plugins/javac/src/main/java/com/sun/tools/javac/jvm/Gen.java
src-plugins/javac/src/main/java/com/sun/tools/javac/jvm/Items.java
src-plugins/javac/src/main/java/com/sun/tools/javac/jvm/Pool.java
src-plugins/javac/src/main/java/com/sun/tools/javac/jvm/Target.java
src-plugins/javac/src/main/java/com/sun/tools/javac/jvm/UninitializedType.java
src-plugins/javac/src/main/java/com/sun/tools/javac/main/CommandLine.java
src-plugins/javac/src/main/java/com/sun/tools/javac/main/JavaCompiler.java
src-plugins/javac/src/main/java/com/sun/tools/javac/main/JavacOption.java
src-plugins/javac/src/main/java/com/sun/tools/javac/main/Main.java
src-plugins/javac/src/main/java/com/sun/tools/javac/main/OptionName.java
src-plugins/javac/src/main/java/com/sun/tools/javac/main/RecognizedOptions.java
src-plugins/javac/src/main/java/com/sun/tools/javac/model/AnnotationProxyMaker.java
src-plugins/javac/src/main/java/com/sun/tools/javac/model/FilteredMemberList.java
src-plugins/javac/src/main/java/com/sun/tools/javac/model/JavacElements.java
src-plugins/javac/src/main/java/com/sun/tools/javac/model/JavacSourcePosition.java
src-plugins/javac/src/main/java/com/sun/tools/javac/model/JavacTypes.java
src-plugins/javac/src/main/java/com/sun/tools/javac/parser/DocCommentScanner.java
src-plugins/javac/src/main/java/com/sun/tools/javac/parser/EndPosParser.java
src-plugins/javac/src/main/java/com/sun/tools/javac/parser/Keywords.java
src-plugins/javac/src/main/java/com/sun/tools/javac/parser/Lexer.java
src-plugins/javac/src/main/java/com/sun/tools/javac/parser/Parser.java
src-plugins/javac/src/main/java/com/sun/tools/javac/parser/Scanner.java
src-plugins/javac/src/main/java/com/sun/tools/javac/parser/Token.java
src-plugins/javac/src/main/java/com/sun/tools/javac/processing/AnnotationProcessingError.java
src-plugins/javac/src/main/java/com/sun/tools/javac/processing/JavacFiler.java
src-plugins/javac/src/main/java/com/sun/tools/javac/processing/JavacMessager.java
src-plugins/javac/src/main/java/com/sun/tools/javac/processing/JavacProcessingEnvironment.java
src-plugins/javac/src/main/java/com/sun/tools/javac/processing/JavacRoundEnvironment.java
src-plugins/javac/src/main/java/com/sun/tools/javac/processing/PrintingProcessor.java
src-plugins/javac/src/main/java/com/sun/tools/javac/processing/ServiceProxy.java
src-plugins/javac/src/main/java/com/sun/tools/javac/sym/CreateSymbols.java
src-plugins/javac/src/main/java/com/sun/tools/javac/tree/JCTree.java
src-plugins/javac/src/main/java/com/sun/tools/javac/tree/Pretty.java
src-plugins/javac/src/main/java/com/sun/tools/javac/tree/TreeCopier.java
src-plugins/javac/src/main/java/com/sun/tools/javac/tree/TreeInfo.java
src-plugins/javac/src/main/java/com/sun/tools/javac/tree/TreeMaker.java
src-plugins/javac/src/main/java/com/sun/tools/javac/tree/TreeScanner.java
src-plugins/javac/src/main/java/com/sun/tools/javac/tree/TreeTranslator.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/Abort.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/BaseFileManager.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/Bits.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/ByteBuffer.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/ClientCodeException.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/CloseableURLClassLoader.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/Constants.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/Context.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/Convert.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/DiagnosticFormatter.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/FatalError.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/JCDiagnostic.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/LayoutCharacters.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/List.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/ListBuffer.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/Log.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/MandatoryWarningHandler.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/Messages.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/Name.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/Options.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/Pair.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/Position.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/PropagatedException.java
src-plugins/javac/src/main/java/com/sun/tools/javac/util/Warner.java
src-plugins/javac/src/main/java/javax/annotation/processing/AbstractProcessor.java
src-plugins/javac/src/main/java/javax/annotation/processing/Completion.java
src-plugins/javac/src/main/java/javax/annotation/processing/Completions.java
src-plugins/javac/src/main/java/javax/annotation/processing/Filer.java
src-plugins/javac/src/main/java/javax/annotation/processing/FilerException.java
src-plugins/javac/src/main/java/javax/annotation/processing/Messager.java
src-plugins/javac/src/main/java/javax/annotation/processing/ProcessingEnvironment.java
src-plugins/javac/src/main/java/javax/annotation/processing/Processor.java
src-plugins/javac/src/main/java/javax/annotation/processing/RoundEnvironment.java
src-plugins/javac/src/main/java/javax/annotation/processing/SupportedAnnotationTypes.java
src-plugins/javac/src/main/java/javax/annotation/processing/SupportedOptions.java
src-plugins/javac/src/main/java/javax/annotation/processing/SupportedSourceVersion.java
src-plugins/javac/src/main/java/javax/annotation/processing/package-info.java
src-plugins/javac/src/main/java/javax/lang/model/SourceVersion.java
src-plugins/javac/src/main/java/javax/lang/model/element/AnnotationMirror.java
src-plugins/javac/src/main/java/javax/lang/model/element/AnnotationValue.java
src-plugins/javac/src/main/java/javax/lang/model/element/AnnotationValueVisitor.java
src-plugins/javac/src/main/java/javax/lang/model/element/Element.java
src-plugins/javac/src/main/java/javax/lang/model/element/ElementKind.java
src-plugins/javac/src/main/java/javax/lang/model/element/ElementVisitor.java
src-plugins/javac/src/main/java/javax/lang/model/element/ExecutableElement.java
src-plugins/javac/src/main/java/javax/lang/model/element/Modifier.java
src-plugins/javac/src/main/java/javax/lang/model/element/Name.java
src-plugins/javac/src/main/java/javax/lang/model/element/NestingKind.java
src-plugins/javac/src/main/java/javax/lang/model/element/PackageElement.java
src-plugins/javac/src/main/java/javax/lang/model/element/TypeElement.java
src-plugins/javac/src/main/java/javax/lang/model/element/TypeParameterElement.java
src-plugins/javac/src/main/java/javax/lang/model/element/UnknownAnnotationValueException.java
src-plugins/javac/src/main/java/javax/lang/model/element/UnknownElementException.java
src-plugins/javac/src/main/java/javax/lang/model/element/VariableElement.java
src-plugins/javac/src/main/java/javax/lang/model/element/package-info.java
src-plugins/javac/src/main/java/javax/lang/model/package-info.java
src-plugins/javac/src/main/java/javax/lang/model/type/ArrayType.java
src-plugins/javac/src/main/java/javax/lang/model/type/DeclaredType.java
src-plugins/javac/src/main/java/javax/lang/model/type/ErrorType.java
src-plugins/javac/src/main/java/javax/lang/model/type/ExecutableType.java
src-plugins/javac/src/main/java/javax/lang/model/type/MirroredTypeException.java
src-plugins/javac/src/main/java/javax/lang/model/type/MirroredTypesException.java
src-plugins/javac/src/main/java/javax/lang/model/type/NoType.java
src-plugins/javac/src/main/java/javax/lang/model/type/NullType.java
src-plugins/javac/src/main/java/javax/lang/model/type/PrimitiveType.java
src-plugins/javac/src/main/java/javax/lang/model/type/ReferenceType.java
src-plugins/javac/src/main/java/javax/lang/model/type/TypeKind.java
src-plugins/javac/src/main/java/javax/lang/model/type/TypeMirror.java
src-plugins/javac/src/main/java/javax/lang/model/type/TypeVariable.java
src-plugins/javac/src/main/java/javax/lang/model/type/TypeVisitor.java
src-plugins/javac/src/main/java/javax/lang/model/type/UnknownTypeException.java
src-plugins/javac/src/main/java/javax/lang/model/type/WildcardType.java
src-plugins/javac/src/main/java/javax/lang/model/type/package-info.java
src-plugins/javac/src/main/java/javax/lang/model/util/AbstractAnnotationValueVisitor6.java
src-plugins/javac/src/main/java/javax/lang/model/util/AbstractElementVisitor6.java
src-plugins/javac/src/main/java/javax/lang/model/util/AbstractTypeVisitor6.java
src-plugins/javac/src/main/java/javax/lang/model/util/ElementFilter.java
src-plugins/javac/src/main/java/javax/lang/model/util/ElementKindVisitor6.java
src-plugins/javac/src/main/java/javax/lang/model/util/ElementScanner6.java
src-plugins/javac/src/main/java/javax/lang/model/util/Elements.java
src-plugins/javac/src/main/java/javax/lang/model/util/SimpleAnnotationValueVisitor6.java
src-plugins/javac/src/main/java/javax/lang/model/util/SimpleElementVisitor6.java
src-plugins/javac/src/main/java/javax/lang/model/util/SimpleTypeVisitor6.java
src-plugins/javac/src/main/java/javax/lang/model/util/TypeKindVisitor6.java
src-plugins/javac/src/main/java/javax/lang/model/util/Types.java
src-plugins/javac/src/main/java/javax/lang/model/util/package-info.java
src-plugins/javac/src/main/java/javax/tools/Diagnostic.java
src-plugins/javac/src/main/java/javax/tools/DiagnosticCollector.java
src-plugins/javac/src/main/java/javax/tools/DiagnosticListener.java
src-plugins/javac/src/main/java/javax/tools/FileObject.java
src-plugins/javac/src/main/java/javax/tools/ForwardingFileObject.java
src-plugins/javac/src/main/java/javax/tools/ForwardingJavaFileManager.java
src-plugins/javac/src/main/java/javax/tools/ForwardingJavaFileObject.java
src-plugins/javac/src/main/java/javax/tools/JavaCompiler.java
src-plugins/javac/src/main/java/javax/tools/JavaFileManager.java
src-plugins/javac/src/main/java/javax/tools/JavaFileObject.java
src-plugins/javac/src/main/java/javax/tools/OptionChecker.java
src-plugins/javac/src/main/java/javax/tools/SimpleJavaFileObject.java
src-plugins/javac/src/main/java/javax/tools/StandardJavaFileManager.java
src-plugins/javac/src/main/java/javax/tools/StandardLocation.java
src-plugins/javac/src/main/java/javax/tools/Tool.java
src-plugins/javac/src/main/java/javax/tools/ToolProvider.java
src-plugins/javac/src/main/java/javax/tools/package-info.java
src-plugins/javac/src/main/javadoc/resources/javax/lang/overview.html
src-plugins/javac/src/main/javadoc/resources/javax/overview.html
src-plugins/javac/src/main/resources/com/sun/tools/javac/resources/compiler.properties
src-plugins/javac/src/main/resources/com/sun/tools/javac/resources/compiler_ja.properties
src-plugins/javac/src/main/resources/com/sun/tools/javac/resources/compiler_zh_CN.properties
src-plugins/javac/src/main/resources/com/sun/tools/javac/resources/javac.properties
src-plugins/javac/src/main/resources/com/sun/tools/javac/resources/javac_ja.properties
src-plugins/javac/src/main/resources/com/sun/tools/javac/resources/javac_zh_CN.properties
src-plugins/javac/src/main/resources/com/sun/tools/javac/resources/legacy.properties
src-plugins/javac/src/main/resources/com/sun/tools/javac/resources/version.properties
src-plugins/javac/src/main/resources/com/sun/tools/javac/services/javax.tools.JavaCompilerTool
src-plugins/jep/.factorypath
src-plugins/jep/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/jep/JEPTestExpressions.txt
src-plugins/jep/org/nfunk/jep/Parser.jj
src-plugins/jep/org/nfunk/jep/Parser.jjt
src-plugins/jep/pom.xml
src-plugins/jep/src/main/java/org/lsmp/djep/djep/DJep.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/DPrintVisitor.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/DSymbolTable.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/DVariable.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/DVariableFactory.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/Diff.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/DiffRulesI.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/DifferentiationVisitor.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/PartialDerivative.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/diffRules/AdditionDiffRule.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/diffRules/ChainRuleDiffRules.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/diffRules/DivideDiffRule.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/diffRules/MacroDiffRules.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/diffRules/MacroFunctionDiffRules.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/diffRules/MultiplyDiffRule.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/diffRules/PassThroughDiffRule.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/diffRules/PowerDiffRule.java
src-plugins/jep/src/main/java/org/lsmp/djep/djep/diffRules/SubtractDiffRule.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/GOperatorSet.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/GroupI.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/GroupJep.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/PolynomialVisitor.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/function/GAdd.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/function/GComparative.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/function/GDivide.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/function/GList.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/function/GLogical.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/function/GMod.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/function/GMultiply.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/function/GNot.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/function/GPower.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/function/GSubtract.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/function/GUMinus.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/groups/AlgebraicExtension.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/groups/BigReals.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/groups/ExtendedFreeGroup.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/groups/FreeGroup.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/groups/Group.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/groups/Integers.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/groups/PermutationGroup.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/groups/Quaternions.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/groups/Rationals.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/groups/Reals.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/groups/Zn.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/interfaces/AbelianGroupI.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/interfaces/FieldI.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/interfaces/HasDivI.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/interfaces/HasListI.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/interfaces/HasModI.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/interfaces/HasPowerI.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/interfaces/IntegralDomainI.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/interfaces/OrderedSetI.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/interfaces/RingI.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/values/AlgebraicExtensionElement.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/values/FreeGroupElement.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/values/HasComplexValueI.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/values/Permutation.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/values/Polynomial.java
src-plugins/jep/src/main/java/org/lsmp/djep/groupJep/values/Rational.java
src-plugins/jep/src/main/java/org/lsmp/djep/jama/Inverse.java
src-plugins/jep/src/main/java/org/lsmp/djep/jama/JamaUtil.java
src-plugins/jep/src/main/java/org/lsmp/djep/jama/Rank.java
src-plugins/jep/src/main/java/org/lsmp/djep/jama/Solve.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/MatrixEvaluator.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/MatrixJep.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/MatrixNodeFactory.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/MatrixOperatorSet.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/MatrixPartialDerivative.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/MatrixPreprocessor.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/MatrixSpecialEvaluationI.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/MatrixVariable.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/MatrixVariableFactory.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/MatrixVariableI.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/SpecialPreProcessorI.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/function/MArrayAccess.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/function/MAssign.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/function/MDiff.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/function/MIf.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/function/MList.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/function/MMap.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/function/MPower.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/function/MSum.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/nodeTypes/ASTMConstant.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/nodeTypes/ASTMFunNode.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/nodeTypes/ASTMVarNode.java
src-plugins/jep/src/main/java/org/lsmp/djep/matrixJep/nodeTypes/MatrixNodeI.java
src-plugins/jep/src/main/java/org/lsmp/djep/mrpe/MRpCommandList.java
src-plugins/jep/src/main/java/org/lsmp/djep/mrpe/MRpEval.java
src-plugins/jep/src/main/java/org/lsmp/djep/mrpe/MRpRes.java
src-plugins/jep/src/main/java/org/lsmp/djep/rewrite/AbstractRewrite.java
src-plugins/jep/src/main/java/org/lsmp/djep/rewrite/CollectPowers.java
src-plugins/jep/src/main/java/org/lsmp/djep/rewrite/ExpandBrackets.java
src-plugins/jep/src/main/java/org/lsmp/djep/rewrite/ExpandPower.java
src-plugins/jep/src/main/java/org/lsmp/djep/rewrite/RewriteRuleI.java
src-plugins/jep/src/main/java/org/lsmp/djep/rewrite/RewriteVisitor.java
src-plugins/jep/src/main/java/org/lsmp/djep/rpe/RpCommand.java
src-plugins/jep/src/main/java/org/lsmp/djep/rpe/RpCommandList.java
src-plugins/jep/src/main/java/org/lsmp/djep/rpe/RpEval.java
src-plugins/jep/src/main/java/org/lsmp/djep/sjep/AbstractPNode.java
src-plugins/jep/src/main/java/org/lsmp/djep/sjep/Monomial.java
src-plugins/jep/src/main/java/org/lsmp/djep/sjep/MutiableMonomial.java
src-plugins/jep/src/main/java/org/lsmp/djep/sjep/MutiablePolynomial.java
src-plugins/jep/src/main/java/org/lsmp/djep/sjep/PConstant.java
src-plugins/jep/src/main/java/org/lsmp/djep/sjep/PFunction.java
src-plugins/jep/src/main/java/org/lsmp/djep/sjep/PNodeI.java
src-plugins/jep/src/main/java/org/lsmp/djep/sjep/POperator.java
src-plugins/jep/src/main/java/org/lsmp/djep/sjep/PVariable.java
src-plugins/jep/src/main/java/org/lsmp/djep/sjep/Polynomial.java
src-plugins/jep/src/main/java/org/lsmp/djep/sjep/PolynomialCreator.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/Dimensions.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/VOperatorSet.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/VectorEvaluator.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/VectorJep.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/ArrayAccess.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/BinaryOperatorI.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/Determinant.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/Diagonal.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/Ele.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/ElementComparative.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/ElementDivide.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/ElementMultiply.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/ExteriorProduct.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/GenMat.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/GetDiagonal.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/Id.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/Length.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/MAdd.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/MDivide.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/MDot.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/MMultiply.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/MSubtract.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/MUMinus.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/NaryOperatorI.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/Size.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/Trace.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/Transpose.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/UnaryOperatorI.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/VEle.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/VList.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/VMap.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/VPower.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/VRange.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/function/VSum.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/values/MVector.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/values/Matrix.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/values/MatrixValueI.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/values/Scaler.java
src-plugins/jep/src/main/java/org/lsmp/djep/vectorJep/values/Tensor.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/BaseFormat.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/CommandVisitor.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/CommandVisitorI.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/DeepCopyVisitor.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/DoNothingVisitor.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/ErrorCatchingVisitor.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/Eval.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/MacroFunction.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/NodeFactory.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/PrintVisitor.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/SimplificationVisitor.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/SubstitutionVisitor.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/TreeUtils.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/XEvaluatorVisitor.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/XJep.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/XMath.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/XOperator.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/XOperatorSet.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/XSymbolTable.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/XVariable.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/XVariableFactory.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/Define.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/FromBase.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/Max.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/MaxArg.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/Min.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/MinArg.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/Product.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/Simpson.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/Sum.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/SumType.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/ToBase.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/Trapezium.java
src-plugins/jep/src/main/java/org/lsmp/djep/xjep/function/XAssign.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/AssignmentExample.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/BlockStatments.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/Console.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/DJepApplet.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/DJepConsole.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/DiffExample.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/GroupConsole.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/JamaConsole.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/MRpDiffExample.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/MRpExample.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/MRpSpeed.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/MRpSurfExample.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/MatrixConsole.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/MatrixExample.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/MatrixSpeed.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/ObserverConsole.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/PrintExample.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/RpExample.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/RpSpeed.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/SJepConsole.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/VectorConsole.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/VectorExample.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/VectorPrint.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/XJepConsole.java
src-plugins/jep/src/main/java/org/lsmp/djepExamples/XJepExample.java
src-plugins/jep/src/main/java/org/nfunk/jep/ASTConstant.java
src-plugins/jep/src/main/java/org/nfunk/jep/ASTFunNode.java
src-plugins/jep/src/main/java/org/nfunk/jep/ASTStart.java
src-plugins/jep/src/main/java/org/nfunk/jep/ASTVarNode.java
src-plugins/jep/src/main/java/org/nfunk/jep/EvaluatorI.java
src-plugins/jep/src/main/java/org/nfunk/jep/EvaluatorVisitor.java
src-plugins/jep/src/main/java/org/nfunk/jep/FunctionTable.java
src-plugins/jep/src/main/java/org/nfunk/jep/JEP.java
src-plugins/jep/src/main/java/org/nfunk/jep/JJTParserState.java
src-plugins/jep/src/main/java/org/nfunk/jep/JavaCharStream.java
src-plugins/jep/src/main/java/org/nfunk/jep/Node.java
src-plugins/jep/src/main/java/org/nfunk/jep/Operator.java
src-plugins/jep/src/main/java/org/nfunk/jep/OperatorSet.java
src-plugins/jep/src/main/java/org/nfunk/jep/ParseException.java
src-plugins/jep/src/main/java/org/nfunk/jep/Parser.java
src-plugins/jep/src/main/java/org/nfunk/jep/ParserConstants.java
src-plugins/jep/src/main/java/org/nfunk/jep/ParserDumpVisitor.java
src-plugins/jep/src/main/java/org/nfunk/jep/ParserTokenManager.java
src-plugins/jep/src/main/java/org/nfunk/jep/ParserTreeConstants.java
src-plugins/jep/src/main/java/org/nfunk/jep/ParserVisitor.java
src-plugins/jep/src/main/java/org/nfunk/jep/SimpleNode.java
src-plugins/jep/src/main/java/org/nfunk/jep/SymbolTable.java
src-plugins/jep/src/main/java/org/nfunk/jep/Token.java
src-plugins/jep/src/main/java/org/nfunk/jep/TokenMgrError.java
src-plugins/jep/src/main/java/org/nfunk/jep/Variable.java
src-plugins/jep/src/main/java/org/nfunk/jep/VariableFactory.java
src-plugins/jep/src/main/java/org/nfunk/jep/evaluation/CommandElement.java
src-plugins/jep/src/main/java/org/nfunk/jep/evaluation/CommandEvaluator.java
src-plugins/jep/src/main/java/org/nfunk/jep/evaluation/ExpressionCompiler.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Abs.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Add.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/ArcCosine.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/ArcCosineH.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/ArcSine.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/ArcSineH.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/ArcTanH.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/ArcTangent.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/ArcTangent2.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Arg.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Assign.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Binomial.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/CallbackEvaluationI.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Ceil.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Comparative.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/ComplexPFMC.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Conjugate.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Cosine.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/CosineH.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Cross.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Divide.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Dot.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Ele.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Exp.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Floor.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/If.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Imaginary.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/LValueI.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/List.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Logarithm.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Logical.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Modulus.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Multiply.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/NaturalLogarithm.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Not.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Polar.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/PostfixMathCommand.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/PostfixMathCommandI.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Power.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Random.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Range.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Real.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Round.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Sine.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/SineH.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/SpecialEvaluationI.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/SquareRoot.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Str.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Subtract.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Sum.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/TanH.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/Tangent.java
src-plugins/jep/src/main/java/org/nfunk/jep/function/UMinus.java
src-plugins/jep/src/main/java/org/nfunk/jep/type/Complex.java
src-plugins/jep/src/main/java/org/nfunk/jep/type/DoubleNumberFactory.java
src-plugins/jep/src/main/java/org/nfunk/jep/type/NumberFactory.java
src-plugins/jep/src/main/java/org/nfunk/jepexamples/Console.java
src-plugins/jep/src/main/java/org/nfunk/jepexamples/Evaluator.java
src-plugins/jep/src/main/java/org/nfunk/jepexamples/Fractal.java
src-plugins/jep/src/main/java/org/nfunk/jepexamples/FractalCanvas.java
src-plugins/jep/src/main/java/org/nfunk/jepexamples/FunctionPlotter.java
src-plugins/jep/src/main/java/org/nfunk/jepexamples/GraphCanvas.java
src-plugins/jep/src/main/java/org/nfunk/jepexamples/LargeExpressionTest.java
src-plugins/jep/src/main/java/org/nfunk/jepexamples/SimpleTest.java
src-plugins/jep/src/main/java/org/nfunk/jepexamples/ThreadTest.java
src-plugins/jep/src/main/java/org/nfunk/jepexamples/ThreadTestThread.java
src-plugins/jep/src/main/javadoc/overview.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/djep/diffRules/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/djep/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/groupJep/function/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/groupJep/groups/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/groupJep/interfaces/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/groupJep/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/groupJep/values/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/jama/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/matrixJep/function/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/matrixJep/nodeTypes/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/matrixJep/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/mrpe/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/rewrite/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/rpe/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/sjep/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/vectorJep/function/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/vectorJep/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/vectorJep/values/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/xjep/function/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djep/xjep/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djepExamples/package.html
src-plugins/jep/src/main/javadoc/resources/org/lsmp/djepJUnit/package.html
src-plugins/jep/src/main/javadoc/resources/org/nfunk/jep/evaluation/package.html
src-plugins/jep/src/main/javadoc/resources/org/nfunk/jep/function/package.html
src-plugins/jep/src/main/javadoc/resources/org/nfunk/jep/package.html
src-plugins/jep/src/main/javadoc/resources/org/nfunk/jep/type/package.html
src-plugins/jep/src/main/javadoc/resources/org/nfunk/jepexamples/package.html
src-plugins/jep/src/main/javadoc/resources/org/nfunk/jeptesting/package.html
src-plugins/jep/src/test/java/org/lsmp/djepJUnit/AllTests.java
src-plugins/jep/src/test/java/org/lsmp/djepJUnit/DJepTest.java
src-plugins/jep/src/test/java/org/lsmp/djepJUnit/GroupJepTest.java
src-plugins/jep/src/test/java/org/lsmp/djepJUnit/JepTest.java
src-plugins/jep/src/test/java/org/lsmp/djepJUnit/MRpTest.java
src-plugins/jep/src/test/java/org/lsmp/djepJUnit/MatrixJepTest.java
src-plugins/jep/src/test/java/org/lsmp/djepJUnit/RewriteTest.java
src-plugins/jep/src/test/java/org/lsmp/djepJUnit/RpTest.java
src-plugins/jep/src/test/java/org/lsmp/djepJUnit/SJepTest.java
src-plugins/jep/src/test/java/org/lsmp/djepJUnit/VectorJepTest.java
src-plugins/jep/src/test/java/org/lsmp/djepJUnit/XJepTest.java
src-plugins/jep/src/test/java/org/nfunk/jeptesting/AllTests.java
src-plugins/jep/src/test/java/org/nfunk/jeptesting/BugsTest.java
src-plugins/jep/src/test/java/org/nfunk/jeptesting/ComplexTest.java
src-plugins/jep/src/test/java/org/nfunk/jeptesting/JEPTest.java
src-plugins/jep/src/test/java/org/nfunk/jeptesting/LogarithmTest.java
src-plugins/jep/src/test/java/org/nfunk/jeptesting/NaturalLogarithmTest.java
src-plugins/legacy-imglib1/pom.xml
src-plugins/legacy-imglib1/src/main/java/imglib/ops/condition/And.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/condition/AxisLessThan.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/condition/Condition.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/condition/Not.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/condition/Or.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/condition/PixelOnBorder.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/condition/ValueGreaterThan.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/condition/ValueLessThan.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/function/RealFunction.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/function/p1/UnaryOperatorFunction.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/function/p2/BinaryOperatorFunction.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/function/pn/AvgFunction.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/function/pn/ConstFunction.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/function/pn/NullFunction.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/observer/IterationStatus.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/observer/ProgressTracker.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operation/AssignOperation.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operation/MultiImageIterator.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/BinaryOperator.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/UnaryOperator.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/Add.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/And.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/Average.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/Copy.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/CopyTransparentZero.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/Difference.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/Divide.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/Max.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/Min.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/Multiply.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/Or.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/Subtract.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/binary/Xor.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/Abs.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/AddConstant.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/AddNoise.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/AndConstant.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/Constant.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/Copy.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/DivideByConstant.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/Exp.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/Gamma.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/Invert.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/Log.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/Max.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/Min.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/MultiplyByConstant.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/OrConstant.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/Reciprocal.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/Sqr.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/Sqrt.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/SubtractConstant.java
src-plugins/legacy-imglib1/src/main/java/imglib/ops/operator/unary/XorConstant.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/Factory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/Algorithm.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/Benchmark.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/BenchmarkAlgorithm.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/CanvasImage.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/MultiThreaded.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/MultiThreadedAlgorithm.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/MultiThreadedBenchmarkAlgorithm.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/OutputAlgorithm.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/Precision.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/ROIAlgorithm.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/correlation/CrossCorrelation.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/extremafinder/AbstractRegionalExtremaFinder.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/extremafinder/RegionalExtremaFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/extremafinder/RegionalExtremaFinder.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/extremafinder/RegionalExtremaFinder2D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/extremafinder/RegionalExtremaFinder3D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/fft/Bandpass.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/fft/FFTFunctions.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/fft/FourierConvolution.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/fft/FourierTransform.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/fft/InverseFourierConvolution.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/fft/InverseFourierTransform.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/fft/PhaseCorrelation.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/fft/PhaseCorrelationPeak.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/floydsteinberg/FloydSteinbergDithering.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/function/NormMinMax.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/function/SubtractNorm.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/function/SubtractNormReal.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/function/SubtractReal.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/gauss/DownSample.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/gauss/GaussianConvolution.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/gauss/GaussianConvolution2.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/gauss/GaussianConvolution3.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/gauss/GaussianConvolution4.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/gauss/GaussianConvolutionReal.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/histogram/Histogram.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/histogram/HistogramBin.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/histogram/HistogramBinFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/histogram/HistogramKey.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/histogram/arbitrary/RealHistogramBinFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/histogram/discrete/DiscreteIntHistogramBinFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/integral/IntegralImage.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/integral/IntegralImageDouble.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/integral/IntegralImageLong.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/integral/ScaleAreaAveraging2d.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/kdtree/DistanceComparator.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/kdtree/KDTree.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/kdtree/NNearestNeighborSearch.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/kdtree/NearestNeighborSearch.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/kdtree/RadiusNeighborSearch.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/kdtree/TestKDTree.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/kdtree/node/Leaf.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/kdtree/node/Node.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/kdtree/node/NonLeaf.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/kdtree/node/SimpleNode.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/labeling/AllConnectedComponents.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/labeling/BinaryInterpolation2D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/labeling/GradientWatershed.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/labeling/Watershed.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/ComputeMinMax.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/ImageCalculator.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/ImageCalculatorInPlace.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/ImageConverter.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/LocalizablePoint.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/MathLib.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/NormalizeImageFloat.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/NormalizeImageMinMax.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/PickImagePeaks.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/mirror/MirrorImage.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/pde/AnisotropicDiffusion.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/peak/FitFunction.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/peak/GaussianMultiDLM.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/peak/GaussianPeakFitterND.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/peak/LevenbergMarquardtSolver.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/projection/MaxProjection.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/roi/DirectConvolution.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/roi/DirectCrossCorr.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/roi/MedianFilter.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/roi/MorphClose.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/roi/MorphDilate.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/roi/MorphErode.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/roi/MorphOpen.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/roi/StatisticalOperation.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/roi/StructuringElement.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/AdaptiveNonMaximalSuppression.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/DifferenceOfGaussian.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/DifferenceOfGaussianPeak.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/DifferenceOfGaussianReal.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/DifferenceOfGaussianReal1.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/ScaleSpace.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/SubpixelLocalization.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/transformation/HoughLineTransform.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/transformation/HoughTransform.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/transformation/ImageTransform.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/Container.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/Container3D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/ContainerFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/ContainerImpl.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/DirectAccessContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/DirectAccessContainerFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/DirectAccessContainerImpl.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/ImageProperties.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/PixelGridContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/PixelGridContainerFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/PixelGridContainerImpl.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/array/Array.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/array/Array3D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/array/ArrayContainerFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/BitAccess.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/ByteAccess.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/CharAccess.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/DataAccess.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/DoubleAccess.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/FakeAccess.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/FloatAccess.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/IntAccess.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/LongAccess.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/PlanarAccess.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/ShortAccess.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/ArrayDataAccess.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/BitArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/ByteArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/CharArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/DoubleArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/FakeArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/FloatArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/IntArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/LongArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/NIOByteArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/NIOCharArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/NIODoubleArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/NIOFloatArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/NIOIntArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/NIOLongArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/NIOShortArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/basictypecontainer/array/ShortArray.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/cell/Cell.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/cell/CellContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/cell/CellContainerFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/constant/ConstantContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/constant/ConstantContainerFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/BitDynamicContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/BitDynamicContainerAccessor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/ByteDynamicContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/ByteDynamicContainerAccessor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/CharDynamicContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/CharDynamicContainerAccessor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/DoubleDynamicContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/DoubleDynamicContainerAccessor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/DynamicContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/DynamicContainerAccessor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/DynamicContainerFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/FloatDynamicContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/FloatDynamicContainerAccessor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/IntDynamicContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/IntDynamicContainerAccessor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/LongDynamicContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/LongDynamicContainerAccessor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/ShortDynamicContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/dynamic/ShortDynamicContainerAccessor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/imageplus/ByteImagePlus.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/imageplus/FloatImagePlus.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/imageplus/ImagePlusContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/imageplus/ImagePlusContainerFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/imageplus/IntImagePlus.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/imageplus/ShortImagePlus.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/planar/PlanarContainer.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/planar/PlanarContainerFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/shapelist/ShapeList.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/shapelist/ShapeListCached.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/container/shapelist/ShapeListContainerFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/Cursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/CursorImpl.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/Iterable.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/Localizable.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/Localizable3D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/LocalizableByDim.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/LocalizableByDim3D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/LocalizableByDimCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/LocalizableByDimCursor3D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/LocalizableCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/LocalizableCursor3D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/LocalizablePlane.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/LocalizablePlaneCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/array/Array3DLocalizableByDimCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/array/Array3DLocalizableByDimOutOfBoundsCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/array/Array3DLocalizableCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/array/ArrayCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/array/ArrayLocalizableByDimCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/array/ArrayLocalizableByDimOutOfBoundsCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/array/ArrayLocalizableCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/array/ArrayLocalizablePlaneCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/cell/CellCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/cell/CellLocalizableByDimCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/cell/CellLocalizableByDimOutOfBoundsCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/cell/CellLocalizableCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/cell/CellLocalizablePlaneCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/constant/ConstantCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/constant/ConstantLocalizableByDimCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/constant/ConstantLocalizableByDimOutOfBoundsCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/constant/ConstantLocalizableCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/constant/ConstantLocalizablePlaneCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/dynamic/DynamicCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/dynamic/DynamicLocalizableByDimCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/dynamic/DynamicLocalizableByDimOutOfBoundsCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/dynamic/DynamicLocalizableCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/dynamic/DynamicLocalizablePlaneCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/imageplus/ImagePlusCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/imageplus/ImagePlusCursor2D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/imageplus/ImagePlusLocalizableByDimCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/imageplus/ImagePlusLocalizableByDimOutOfBoundsCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/imageplus/ImagePlusLocalizableCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/imageplus/ImagePlusLocalizablePlaneCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/link/CursorLink.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/link/GenericCursorLink.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/link/NullLink.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/planar/PlanarCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/planar/PlanarCursor2D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/planar/PlanarLocalizableByDimCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/planar/PlanarLocalizableByDimOutOfBoundsCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/planar/PlanarLocalizableCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/planar/PlanarLocalizablePlaneCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/shapelist/ShapeListCache.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/shapelist/ShapeListCacheFIFO.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/shapelist/ShapeListCachedLocalizableByDimCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/shapelist/ShapeListCachedLocalizableByDimOutOfBoundsCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/shapelist/ShapeListCachedLocalizablePlaneCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/shapelist/ShapeListLocalizableByDimCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/shapelist/ShapeListLocalizableByDimOutOfBoundsCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/shapelist/ShapeListLocalizablePlaneCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/AbstractSortedGrayLevelIterator.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/AbstractSpecialCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/CoordsCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/DiscCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/DomainCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/HyperSphereIterator.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/LocalNeighborhoodCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/LocalNeighborhoodCursor3D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/LocalNeighborhoodCursor3DOptimized.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/LocalNeighborhoodCursorFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/RegionOfInterestCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/SortedGrayLevelIteratorAllContainers.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/SortedGrayLevelIteratorArrayContainerOnly.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/SortedGrayLevelIteratorFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/SphereCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/special/Utils.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/vector/AbstractVector.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/vector/Dimensionality.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/vector/Vector.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/vector/Vector1d.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/vector/Vector2d.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/vector/Vector3d.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/cursor/vector/Vector4d.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/exception/ImgLibException.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/function/Converter.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/function/Function.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/function/IntegerTypeConverter.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/function/RealTypeConverter.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/function/VoidConverter.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/Image.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/ImageFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/ImagePlusAdapter.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/BasePairTypeDisplay.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/BitTypeDisplay.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/ComplexTypeComplexValueDisplay.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/ComplexTypePhaseSpectrumDisplay.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/ComplexTypePowerSpectrumDisplay.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/ComplexTypeRealValueDisplay.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/Display.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/IntegerTypeDisplay.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/RealTypeDisplay.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/ImageJFunctions.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/ImageJVirtualDisplay.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/ImageJVirtualStack.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/InverseTransformDescription.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/RGBALegacyTypeDisplay.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/SliceTransformableExtraction.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/SliceTransformableExtractionFloat.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/Interpolator.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/Interpolator1D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/Interpolator2D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/Interpolator3D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/InterpolatorFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/InterpolatorImpl.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/dct/DCTInterpolator.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/dct/DCTInterpolatorFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/lanczos/LanczosInterpolator.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/lanczos/LanczosInterpolatorFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/linear/LinearInterpolator.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/linear/LinearInterpolator1D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/linear/LinearInterpolator2D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/linear/LinearInterpolator2DRealType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/linear/LinearInterpolator3D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/linear/LinearInterpolator3DRealType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/linear/LinearInterpolatorFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/nearestneighbor/NearestNeighborInterpolator.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/nearestneighbor/NearestNeighborInterpolator1D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/nearestneighbor/NearestNeighborInterpolator2D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/nearestneighbor/NearestNeighborInterpolator3D.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/interpolation/nearestneighbor/NearestNeighborInterpolatorFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/io/ImageOpener.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/io/LOCI.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/labeling/BoundingBox.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/labeling/DefaultLabelingCursorStrategy.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/labeling/DefaultLabelingCursorStrategyFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/labeling/Labeling.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/labeling/LabelingCursorStrategy.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/labeling/LabelingCursorStrategyFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/labeling/LabelingMapping.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/labeling/LabelingType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/labeling/LocalizableLabelingCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/labeling/LocalizableLabelingPerimeterCursor.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/multithreading/Chunk.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/multithreading/SimpleMultiThreading.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/multithreading/Stopable.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/outofbounds/OutOfBoundsStrategy.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/outofbounds/OutOfBoundsStrategyFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/outofbounds/OutOfBoundsStrategyMirror.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/outofbounds/OutOfBoundsStrategyMirrorExpWindowing.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/outofbounds/OutOfBoundsStrategyMirrorExpWindowingFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/outofbounds/OutOfBoundsStrategyMirrorFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/outofbounds/OutOfBoundsStrategyPeriodic.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/outofbounds/OutOfBoundsStrategyPeriodicFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/outofbounds/OutOfBoundsStrategyValue.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/outofbounds/OutOfBoundsStrategyValueFactory.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/BasePairType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/BooleanType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/Type.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/TypeConverter.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/TypeImpl.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/label/BasePairBitType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/label/BasePairCharType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/label/FakeType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/logic/BitType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/ComplexType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/ExponentialMathType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/IntegerType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/NumericType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/RGBALegacyType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/RealType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/complex/ComplexDoubleType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/complex/ComplexFloatType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/complex/ComplexTypeImpl.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/integer/ByteType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/integer/GenericByteType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/integer/GenericIntType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/integer/GenericShortType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/integer/IntType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/integer/IntegerTypeImpl.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/integer/LongType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/integer/ShortType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/integer/Unsigned12BitType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/integer/UnsignedByteType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/integer/UnsignedIntType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/integer/UnsignedShortType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/real/DoubleType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/real/FloatType.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/type/numeric/real/RealTypeImpl.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/util/DevUtil.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/util/Util.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ExistingByteArrays.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ExistingCharArrays.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ExistingDoubleArrays.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ExistingFloatArrays.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ExistingIntArrays.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ExistingLongArrays.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ExistingShortArrays.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib1.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ListImgCellsLoad.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/LoadCell.java
src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/PredefinedCellContainerFactory.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/ImgLib.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Affine2D.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Affine3D.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/BandpassFilter.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Close.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Dilate.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Dither.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Downsample.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Erode.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/FFT.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Gauss.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/HoughLineTransform.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/InverseFFT.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/MedianFilter.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Normalize.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/NormalizeSum.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Open.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Process.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Resample.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Scale2D.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/Scale3D.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/fn/AbstractAffine3D.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/fn/AbstractNormalize.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/fn/AlgorithmUtil.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/fn/Morph.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/analysis/BarChart.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/analysis/ChartUtils.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/analysis/DoGPeaks.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/analysis/Histogram.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/analysis/PickPeaks.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/Alpha.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/Blue.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/Brightness.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/Channel.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/Green.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/HSB.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/Hue.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/Luminance.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/RGBA.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/Red.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/Saturation.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/fn/ChannelOp.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/fn/ColorFunction.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/fn/HSBOp.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/color/fn/RGBAOp.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/ACos.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/ASin.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/ATan.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/ATan2.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Abs.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Add.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/And.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Average.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Cbrt.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Ceil.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Compute.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Cos.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Cosh.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Difference.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Divide.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Exp.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Expm1.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Floor.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Hypot.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/IEEEremainder.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Log.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Log10.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Log1p.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Max.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Min.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Multiply.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Or.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Pow.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Random.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Rint.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Round.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Signum.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Sin.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Sinh.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Sqrt.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Subtract.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Tan.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Tanh.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/ToDegrees.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/ToRadians.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/Xor.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/fn/BinaryOperation.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/fn/FloatImageOperation.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/fn/IFunction.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/fn/ImageComputation.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/fn/ImageFunction.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/fn/NumberFunction.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/fn/UnaryOperation.java
src-plugins/legacy-imglib1/src/main/java/script/imglib/math/fn/Util.java
src-plugins/legacy-imglib1/src/test/java/AnistotropicDiffusion_TestDrive.java
src-plugins/legacy-imglib1/src/test/java/GaussianFitTestDrive.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/Rev2FunctionalIdeasTest.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/Operation.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/Rev3Tests.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/condition/And.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/condition/AxisGreaterThan.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/condition/Condition.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/condition/Not.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/condition/Or.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/condition/ValueLessThan.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/constraints/Constraints.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/AverageFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/BinaryFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/ComposedImageFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/ConstantFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/ConvolutionFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/DistanceFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/ImageFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/IntegerIndexedScalarFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/MedianFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/NullFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/ScalarFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/UnaryFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/function/VectorFunction.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/operator/BinaryOperator.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/operator/UnaryOperator.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/operator/binary/AddOperator.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/operator/binary/DivideOperator.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/operator/binary/MultiplyOperator.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/operator/binary/SubtractOperator.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/operator/unary/HalfOperator.java
src-plugins/legacy-imglib1/src/test/java/imglib/ops/example/rev3/operator/unary/NegateOperator.java
src-plugins/legacy-imglib1/src/test/java/script/imglib/test/Benchmark.java
src-plugins/legacy-imglib1/src/test/java/script/imglib/test/TestPlot.java
src-plugins/level_sets/.factorypath
src-plugins/level_sets/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/level_sets/pom.xml
src-plugins/level_sets/src/main/java/levelsets/algorithm/ActiveContours.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/BandElement.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/BandElementCache.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/Coordinate.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredArray3D.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredByteArray3D.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredDoubleArray3D.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredIntArray3D.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredObjectArray3D.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/DenseFieldLevelSet.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/FastMarching.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/FastMarchingBandElement.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/GeodesicActiveContour.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/LevelSetFactory.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/LevelSetImplementation.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/SparseFieldLevelSet.java
src-plugins/level_sets/src/main/java/levelsets/algorithm/StagedAlgorithm.java
src-plugins/level_sets/src/main/java/levelsets/filter/BufferedImageBuilder.java
src-plugins/level_sets/src/main/java/levelsets/filter/Canny.java
src-plugins/level_sets/src/main/java/levelsets/filter/ConvolutionFilter.java
src-plugins/level_sets/src/main/java/levelsets/filter/Dilatation.java
src-plugins/level_sets/src/main/java/levelsets/filter/Erosion.java
src-plugins/level_sets/src/main/java/levelsets/filter/Filter.java
src-plugins/level_sets/src/main/java/levelsets/filter/GreyScaleFilter.java
src-plugins/level_sets/src/main/java/levelsets/filter/GreyValueErosion.java
src-plugins/level_sets/src/main/java/levelsets/filter/MedianFilter.java
src-plugins/level_sets/src/main/java/levelsets/filter/MorphologicalOperator.java
src-plugins/level_sets/src/main/java/levelsets/filter/SUSAN.java
src-plugins/level_sets/src/main/java/levelsets/filter/SimpleEdgeDetect.java
src-plugins/level_sets/src/main/java/levelsets/filter/Sobel.java
src-plugins/level_sets/src/main/java/levelsets/filter/UnsetPixel.java
src-plugins/level_sets/src/main/java/levelsets/ij/ImageContainer.java
src-plugins/level_sets/src/main/java/levelsets/ij/ImageProgressContainer.java
src-plugins/level_sets/src/main/java/levelsets/ij/LevelSet.java
src-plugins/level_sets/src/main/java/levelsets/ij/StateContainer.java
src-plugins/level_sets/src/main/resources/plugins.config
src-plugins/mij/.factorypath
src-plugins/mij/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/mij/pom.xml
src-plugins/mij/src/main/java/MIJ.java
src-plugins/pal-optimization/.factorypath
src-plugins/pal-optimization/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/pal-optimization/pom.xml
src-plugins/pal-optimization/src/main/java/pal/math/Binomial.java
src-plugins/pal-optimization/src/main/java/pal/math/BoundsCheckedFunction.java
src-plugins/pal-optimization/src/main/java/pal/math/ConjugateDirectionSearch.java
src-plugins/pal-optimization/src/main/java/pal/math/ConjugateGradientSearch.java
src-plugins/pal-optimization/src/main/java/pal/math/DifferentialEvolution.java
src-plugins/pal-optimization/src/main/java/pal/math/ErrorFunction.java
src-plugins/pal-optimization/src/main/java/pal/math/GammaFunction.java
src-plugins/pal-optimization/src/main/java/pal/math/GeneralizedDEOptimizer.java
src-plugins/pal-optimization/src/main/java/pal/math/LineFunction.java
src-plugins/pal-optimization/src/main/java/pal/math/MFWithGradient.java
src-plugins/pal-optimization/src/main/java/pal/math/MachineAccuracy.java
src-plugins/pal-optimization/src/main/java/pal/math/MathUtils.java
src-plugins/pal-optimization/src/main/java/pal/math/MersenneTwisterFast.java
src-plugins/pal-optimization/src/main/java/pal/math/MultivariateFunction.java
src-plugins/pal-optimization/src/main/java/pal/math/MultivariateMinimum.java
src-plugins/pal-optimization/src/main/java/pal/math/NumericalDerivative.java
src-plugins/pal-optimization/src/main/java/pal/math/OrthogonalLineFunction.java
src-plugins/pal-optimization/src/main/java/pal/math/OrthogonalSearch.java
src-plugins/pal-optimization/src/main/java/pal/math/StochasticOSearch.java
src-plugins/pal-optimization/src/main/java/pal/math/UnivariateFunction.java
src-plugins/pal-optimization/src/main/java/pal/math/UnivariateMinimum.java
src-plugins/pal-optimization/src/main/java/pal/math/UrnModel.java
src-plugins/panorama_/.factorypath
src-plugins/panorama_/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/panorama_/pom.xml
src-plugins/panorama_/src/main/java/mpicbg/panorama/EquirectangularPanorama_View.java
src-plugins/panorama_/src/main/java/mpicbg/panorama/EquirectangularProjection.java
src-plugins/panorama_/src/main/java/mpicbg/panorama/HomogeneousMapping.java
src-plugins/panorama_/src/main/java/mpicbg/panorama/PanoramaCamera.java
src-plugins/panorama_/src/main/java/mpicbg/panorama/Panorama_View.java
src-plugins/panorama_/src/main/java/mpicbg/panorama/RectlinearCamera.java
src-plugins/panorama_/src/main/resources/LICENSE.GPL
src-plugins/panorama_/src/main/resources/plugins.config
src-plugins/pom.xml
src-plugins/register_virtual_stack_slices/.factorypath
src-plugins/register_virtual_stack_slices/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/register_virtual_stack_slices/pom.xml
src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java
src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Transform_Virtual_Stack_MT.java
src-plugins/register_virtual_stack_slices/src/main/resources/plugins.config
src-plugins/registration_3d/.factorypath
src-plugins/registration_3d/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/registration_3d/pom.xml
src-plugins/registration_3d/src/main/java/registration3d/Fast_FourierTransform.java
src-plugins/registration_3d/src/main/resources/plugins.config
src-plugins/test-fiji/fiji/Inspect.java
src-plugins/test-fiji/fiji/ShowAWTEvents.java
src-plugins/test-fiji/fiji/Tests.java
src-plugins/test-fiji/fiji/UnregisterAWTListeners.java
src-plugins/wavelets/.factorypath
src-plugins/wavelets/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/wavelets/pom.xml
src-plugins/wavelets/src/main/java/wavelets/ComplexWaveFilter.java
src-plugins/wavelets/src/main/java/wavelets/ComplexWavelet.java
src-plugins/wavelets/src/main/java/wavelets/ImageAccess.java
src-plugins/wavelets/src/main/java/wavelets/WaveSpline.java
src-plugins/wavelets/src/main/java/wavelets/WaveSplineFilter.java
src-plugins/weave_jy2java/.factorypath
src-plugins/weave_jy2java/.settings/org.eclipse.jdt.apt.core.prefs
src-plugins/weave_jy2java/pom.xml
src-plugins/weave_jy2java/src/main/java/fiji/scripting/Weaver.java
src-plugins/zs/zs/solve/LM.java
src-plugins/zs/zs/solve/LMfunc.java
staged-plugins/Color_Inspector_3D.config
staged-plugins/LSM_Toolbox.config
staged-plugins/autocomplete.Fakefile
staged-plugins/batik.Fakefile
staged-plugins/ij-ImageIO_.Fakefile
staged-plugins/ij-ImageIO_.config
staged-plugins/jacl.Fakefile
staged-plugins/jsch.Fakefile
staged-plugins/junit.Fakefile
staged-plugins/jython.Fakefile
staged-plugins/loci_tools.Fakefile
staged-plugins/loci_tools.config
staged-plugins/rsyntaxtextarea.Fakefile
staged-plugins/weka.Fakefile
tests/.gitignore
tests/3d.py
tests/Marching_Cubes_ImgLib.java
tests/class_versions.py
tests/crlf-in-javas.py
tests/extra_file_types.py
tests/lib.py
tests/menus.py
tests/plugin_jars.py
tests/record.py
tests/run.sh
tests/vib.py

Download

Click the following link to download fiji-master.zip.

fiji-master.zip




















Home »
  Javascript Free Code Download »
    UI »




DatePicker
Drag Drop
Grid
GridView
Layout
Photo
Photograph
Spreadsheet
Table
Template
UI
Widget