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Download Hirschberg Global Alignment in C# .NET 2.0

Description

This project contains the C# .NET 2.0 implementation and unit tests for the Hirschberg Global Alignment algorithm. The implementation was done as part of an academic course on "Algorithms for Genomes" (A4G) at the IBIVU Amsterdam.

Source Files

The download file hirschbergcsharp.zip has the following entries.


A4G/A4G.Assignment1/A4G.Assignment1.csproj
A4G/A4G.Assignment1/A4G.Assignment1.csproj.vspscc
A4G/A4G.Assignment1/AssemblyInfo.cs/*w w w.j av  a 2s. c o m*/
A4G/A4G.Assignment1/Program.cs
A4G/A4G.Assignment1/a4g.assignment1.build
A4G/A4G.Assignment1/app.config
A4G/A4G.Assignment2/A4G.Assignment2.csproj
A4G/A4G.Assignment2/A4G.Assignment2.csproj.vspscc
A4G/A4G.Assignment2/AssemblyInfo.cs
A4G/A4G.Assignment2/Program.cs
A4G/A4G.Assignment2/a4g.assignment2.build
A4G/A4G.Assignment2/app.config
A4G/A4G.Assignment3/A4G.Assignment3.csproj
A4G/A4G.Assignment3/A4G.Assignment3.csproj.vspscc
A4G/A4G.Assignment3/AssemblyInfo.cs
A4G/A4G.Assignment3/Program.cs
A4G/A4G.Assignment3/a4g.assignment3.build
A4G/A4G.Assignment3/app.config
A4G/A4G.Core/A4G.Core.Tests/A4G.Core.Tests.csproj
A4G/A4G.Core/A4G.Core.Tests/A4G.Core.Tests.csproj.vspscc
A4G/A4G.Core/A4G.Core.Tests/AuthoringTests.txt
A4G/A4G.Core/A4G.Core.Tests/HirschbergAlignmentTest.cs
A4G/A4G.Core/A4G.Core.Tests/Properties/AssemblyInfo.cs
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/101.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/101.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/102.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/102.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/103.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/103.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/104.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/104.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/201.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/201.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/202.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/202.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/203.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/203.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/204.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/204.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/205.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/205.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/301.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/301.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/302.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/302.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/303.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/303.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/304.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/304.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/401.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/401.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/402.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/402.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/403.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/403.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/404.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/404.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/405.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/405.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/406.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/406.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/407.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/407.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/408.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/408.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/501.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/501.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/502.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/502.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/503.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/503.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/504.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/504.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/505.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/505.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/601.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/601.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/602.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/602.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/603.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/603.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/604.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/604.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/605.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/605.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/gen.sh
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/rand
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/rand.c
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0100.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0100.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0200.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0200.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0300.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0300.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0400.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0400.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0500.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0500.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0600.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0600.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0700.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0700.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0800.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0800.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0900.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s0900.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1000.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1000.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1100.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1100.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1200.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1200.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1300.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1300.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1400.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1400.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1500.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1500.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1600.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1600.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1700.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1700.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1800.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1800.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1900.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s1900.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s2000.0
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/s2000.00
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/IBIVU/tests.tar
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap01.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap02.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap03.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap04.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap05.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap06.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap07.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap08.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap09.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap10.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap11.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap12.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap13.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap14.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap15.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.Gap16.fsa
A4G/A4G.Core/A4G.Core.Tests/TestFiles/HirschbergAlignmentTestFiles/Simple16/Simple16.fsa
A4G/A4G.Core/A4G.Core.Tests/a4g.core.tests.build
A4G/A4G.Core/A4G.Core.csproj
A4G/A4G.Core/A4G.Core.csproj.vspscc
A4G/A4G.Core/AlignmentMatrix.cs
A4G/A4G.Core/AlignmentPath.cs
A4G/A4G.Core/AlignmentScore.cs
A4G/A4G.Core/AssemblyInfo.cs
A4G/A4G.Core/Coordinate.cs
A4G/A4G.Core/FastaFile.cs
A4G/A4G.Core/GibbsSampler.cs
A4G/A4G.Core/HirschbergAlignment.cs
A4G/A4G.Core/LookupGapMethodProvider.cs
A4G/A4G.Core/PolinomialGapMethodProvider.cs
A4G/A4G.Core/Rectangle.cs
A4G/A4G.Core/ScoringMatrix.cs
A4G/A4G.Core/Sequence.cs
A4G/A4G.Core/StateMachine.cs
A4G/A4G.Core/StateMachineEntity.cs
A4G/A4G.Core/TracebackPointers.cs
A4G/A4G.Core/Viterbi.cs
A4G/A4G.Core/a4g.core.build
A4G/A4G.Utils/A4G.Utils.csproj
A4G/A4G.Utils/A4G.Utils.csproj.vspscc
A4G/A4G.Utils/Properties/AssemblyInfo.cs
A4G/A4G.Utils/XmlSerializationHelper.cs
A4G/A4G.Utils/XmlValidationHelper.cs
A4G/A4G.Utils/XsltTransformationHelper.cs
A4G/A4G.Utils/a4g.utils.build
A4G/A4G.nunit
A4G/A4G.sln
A4G/A4G.vsmdi
A4G/A4G.vssscc
A4G/Mapack/AssemblyInfo.cs
A4G/Mapack/CholeskyDecomposition.cs
A4G/Mapack/EigenvalueDecomposition.cs
A4G/Mapack/LuDecomposition.cs
A4G/Mapack/Mapack.csproj
A4G/Mapack/Mapack.csproj.vspscc
A4G/Mapack/Matrix.cs
A4G/Mapack/QrDecomposition.cs
A4G/Mapack/SingularValueDecomposition.cs
A4G/Mapack/mapack.build
A4G/a4g.build
A4G/localtestrun.testrunconfig
BuildProcessTemplates/DefaultTemplate.11.1.xaml
BuildProcessTemplates/DefaultTemplate.xaml
BuildProcessTemplates/LabDefaultTemplate.11.xaml
BuildProcessTemplates/UpgradeTemplate.xaml

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hirschbergcsharp.zip









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