Download bio2rdf webapp Free Java Code

Description

The Bio2RDF webapp, using the QueryAll Linked Data server.

Icons

bio2rdf webapp

Source Files

The download file bio2rdf-webapp-master.zip has the following entries.


.gitignore//from  w  w  w . java 2  s.  co m
README
conf/maven carleton bio2rdf-webapp deploy.launch
conf/maven mquter bio2rdf-webapp deploy.launch
conf/maven protech bio2rdf-webapp deploy.launch
conf/maven quebec bio2rdf-webapp deploy.launch
pom.xml
src/main/resources/config/bio2rdf-profiles.n3
src/main/resources/config/bio2rdf-queries.n3
src/main/resources/config/bio2rdf-ruletests.n3
src/main/resources/config/myexperiment/myexperiment_namespaceentries-config.n3
src/main/resources/config/myexperiment/myexperiment_providers-config.n3
src/main/resources/config/myexperiment/myexperiment_rdfrules-config.n3
src/main/resources/config/namespaces/bio2rdf-namespaceentries-base.n3
src/main/resources/config/namespaces/bio2rdf-namespaceentries-chembl.n3
src/main/resources/config/namespaces/bio2rdf-namespaceentries-dailymed.n3
src/main/resources/config/namespaces/bio2rdf-namespaceentries-diseaseome.n3
src/main/resources/config/namespaces/bio2rdf-namespaceentries-drugbank.n3
src/main/resources/config/namespaces/bio2rdf-namespaceentries-linkedct.n3
src/main/resources/config/namespaces/bio2rdf-namespaceentries-medicare.n3
src/main/resources/config/namespaces/bio2rdf-namespaceentries-ndc.n3
src/main/resources/config/namespaces/bio2rdf-namespaceentries-nmrshiftdb.n3
src/main/resources/config/namespaces/bio2rdf-namespaceentries-release2.n3
src/main/resources/config/namespaces/bio2rdf-namespaceentries-sider.n3
src/main/resources/config/providers/bio2rdf-providers-farmbio.n3
src/main/resources/config/providers/bio2rdf-providers-fasta.n3
src/main/resources/config/providers/bio2rdf-providers-fuberlin.n3
src/main/resources/config/providers/bio2rdf-providers-html.n3
src/main/resources/config/providers/bio2rdf-providers-httpgetproxy.n3
src/main/resources/config/providers/bio2rdf-providers-httpgetredirect.n3
src/main/resources/config/providers/bio2rdf-providers-image.n3
src/main/resources/config/providers/bio2rdf-providers-licenses.n3
src/main/resources/config/providers/bio2rdf-providers-linkedct.n3
src/main/resources/config/providers/bio2rdf-providers-mquter.n3
src/main/resources/config/providers/bio2rdf-providers-nocommunication.n3
src/main/resources/config/providers/bio2rdf-providers-release2-sparql.n3
src/main/resources/config/providers/bio2rdf-providers-sparql.n3
src/main/resources/config/rules/bio2rdf-rdfrules-base.n3
src/main/resources/config/rules/bio2rdf-rdfrules-bioguid.n3
src/main/resources/config/rules/bio2rdf-rdfrules-chembl.n3
src/main/resources/config/rules/bio2rdf-rdfrules-fuberlin.n3
src/main/resources/config/rules/bio2rdf-rdfrules-geospecies.n3
src/main/resources/config/rules/bio2rdf-rdfrules-linkedct.n3
src/main/resources/config/rules/bio2rdf-rdfrules-neurocommons.n3
src/main/resources/config/rules/bio2rdf-rdfrules-obo.n3
src/main/resources/config/rules/bio2rdf-rdfrules-prefixmapping.n3
src/main/resources/config/rules/bio2rdf-rdfrules-sparql.n3
src/main/resources/config/rules/bio2rdf-rdfrules-tcm.n3
src/main/resources/config/rules/bio2rdf-rdfrules-xslt.n3
src/main/resources/config/void-example.n3
src/main/resources/config/webapp/webapp-base-bio2rdf-balancing.n3
src/main/resources/config/webapp/webapp-base-bio2rdf-carleton.n3
src/main/resources/config/webapp/webapp-base-bio2rdf-direct.n3
src/main/resources/config/webapp/webapp-base-bio2rdf-protech.n3
src/main/resources/config/webapp/webapp-base-bio2rdf-quebec.n3
src/main/resources/config/webapp/webapp-base-bio2rdf-release2.n3
src/main/resources/config/webapp/webapp-config-bio2rdf-balancing.n3
src/main/resources/config/webapp/webapp-config-bio2rdf-carleton.n3
src/main/resources/config/webapp/webapp-config-bio2rdf-default.n3
src/main/resources/config/webapp/webapp-config-bio2rdf-direct.n3
src/main/resources/config/webapp/webapp-config-bio2rdf-protech.n3
src/main/resources/config/webapp/webapp-config-bio2rdf-quebec.n3
src/main/resources/config/webapp/webapp-config-bio2rdf-release2.n3
src/main/resources/log4j.properties
src/main/resources/pipes/bio2rdf_all_partial_common_uris.pipe
src/main/resources/pipes/bio2rdf_basic.pipe
src/main/resources/pipes/bio2rdf_basic_from_multiple_uri.pipe
src/main/resources/pipes/bio2rdf_basic_from_uri.pipe
src/main/resources/pipes/bio2rdf_ecocyc_pr_tr_co_in_bi_ci_mesh.pipe
src/main/resources/pipes/bio2rdf_ecocyc_promoter_transcriptionunits.pipe
src/main/resources/pipes/bio2rdf_ecocyc_promoter_transcriptionunits_components.pipe
src/main/resources/pipes/bio2rdf_ecocyc_promoter_transcriptionunits_components_involvedinregulations.pipe
src/main/resources/pipes/bio2rdf_ecocyc_promoter_transcriptionunits_components_involvedinregulations_bindingsites.pipe
src/main/resources/pipes/bio2rdf_ecocyc_promoter_transcriptionunits_components_involvedinregulations_bindingsites_citations.pipe
src/main/resources/pipes/bio2rdf_ecocyc_regulators.pipe
src/main/resources/pipes/bio2rdf_ecocyc_regulators_citations.pipe
src/main/resources/pipes/bio2rdf_ecocyc_regulators_citations_short.pipe
src/main/resources/pipes/bio2rdf_geneid_to_hgnc_symbol.pipe
src/main/resources/pipes/bio2rdf_geneid_to_hgnc_to_drugbank.pipe
src/main/resources/pipes/bio2rdf_geneid_to_hgnc_to_drugbank_drugs.pipe
src/main/resources/pipes/bio2rdf_geneid_to_hgnc_to_drugbank_targets.pipe
src/main/resources/pipes/bio2rdf_geneid_to_hgnc_to_uniprot.pipe
src/main/resources/pipes/bio2rdf_geneid_to_hgnc_to_uniprot_to_drugbank.pipe
src/main/resources/pipes/bio2rdf_gi_geneid_iproclass.pipe
src/main/resources/pipes/bio2rdf_gi_to_geneid_to_pubmed.pipe
src/main/resources/pipes/bio2rdf_gi_to_go.pipe
src/main/resources/pipes/bio2rdf_gi_to_pubmed.pipe
src/main/resources/pipes/bio2rdf_linkstonamespace_from_multiple_helper.pipe
src/main/resources/pipes/bio2rdf_multiple_by_namespace.pipe
src/main/resources/pipes/bio2rdf_ncbigi_to_pubmed_to_mesh.pipe
src/main/resources/pipes/bio2rdf_ncbigi_to_pubmed_to_mesh_labels.pipe
src/main/resources/pipes/bio2rdf_partial_common_uris_by_namespace.pipe
src/main/resources/pipes/bio2rdf_similar_drugbank_drugs_by_drugbank_targets.pipe
src/main/resources/pipes/bio2rdf_similar_drugbank_targets_by_pfam_pdb.pipe
src/main/resources/pipes/bio2rdf_subject_object_slicing.pipe
src/main/resources/pipes/bio2rdf_subject_object_slicing_from_uri.pipe
src/main/resources/pipes/bio2rdf_transform_uri_rdfxml.pipe
src/main/resources/pipes/bio2rdf_transform_uri_rdfxml_linksns_style.pipe
src/main/resources/pipes/bio2rdf_transform_uri_rdfxml_linkstonamespace_style.pipe
src/main/resources/pipes/bio2rdf_uri_rank.pipe
src/main/resources/pipes/bio2rdf_uri_rank_from_uri.pipe
src/main/resources/pipes/cache.ccf
src/main/resources/pipes/operatormapping.xml
src/main/resources/pipes/pipes.list
src/main/resources/queryall.properties
src/main/resources/static/demo.rdf
src/main/resources/static/includes-css/bio2rdf.css
src/main/resources/static/includes-css/gfdynamicfeedcontrol.css
src/main/resources/static/includes-css/html_page_styles.css
src/main/resources/static/includes-css/qut-corpstyle.css
src/main/resources/static/includes-images/2go.png
src/main/resources/static/includes-images/Bio2RDF.jpg
src/main/resources/static/includes-images/Bio2rdf-logo-ob-med.png
src/main/resources/static/includes-images/Bio2rdf-logo-ob-med.svg
src/main/resources/static/includes-images/MQUTeRlogo.png
src/main/resources/static/includes-images/bg.gif
src/main/resources/static/includes-images/bg.png
src/main/resources/static/includes-images/bio2rdf-16.png
src/main/resources/static/includes-images/bio2rdf-banner.jpg
src/main/resources/static/includes-images/blank.gif
src/main/resources/static/includes-images/carleton.jpg
src/main/resources/static/includes-images/carleton_logo.gif
src/main/resources/static/includes-images/chembl_logo.png
src/main/resources/static/includes-images/chul.png
src/main/resources/static/includes-images/ebi_logo.jpg
src/main/resources/static/includes-images/elmo-childish.jpg
src/main/resources/static/includes-images/favicon.ico
src/main/resources/static/includes-images/laval.jpg
src/main/resources/static/includes-images/link_chuq2.png
src/main/resources/static/includes-images/link_laval2.png
src/main/resources/static/includes-images/merged-bio2rdf-banner.jpg
src/main/resources/static/includes-images/my-bio2rdf.png
src/main/resources/static/includes-images/nav_bar.gif
src/main/resources/static/includes-images/openrdf-logo.png
src/main/resources/static/includes-images/protech.jpg
src/main/resources/static/includes-images/qut.jpg
src/main/resources/static/includes-images/rdf-flyer-24.gif
src/main/resources/static/includes-images/rdf-icon.gif
src/main/resources/static/includes-images/rdf-sesame.png
src/main/resources/static/includes-images/realworld.gif
src/main/resources/static/includes-images/title2.jpg
src/main/resources/static/includes-images/transparent.gif
src/main/resources/static/includes-images/virtuoso.png
src/main/resources/static/includes-scripts/gfdynamicfeedcontrol.js
src/main/resources/static/includes-scripts/script.js
src/main/resources/static/pubmed_notice_2010-04-09.html
src/main/resources/static/sitemap.xml
src/main/resources/static/xsl-sources/bind.xsl
src/main/resources/static/xsl-sources/biopatml.xsl
src/main/resources/static/xsl-sources/cid.xsl
src/main/resources/static/xsl-sources/crystaleye.xsl
src/main/resources/static/xsl-sources/geneid.xsl
src/main/resources/static/xsl-sources/gopubmed.xsl
src/main/resources/static/xsl-sources/kegg.xsl
src/main/resources/static/xsl-sources/obo.xsl
src/main/resources/static/xsl-sources/pubchem.xsl
src/main/resources/static/xsl-sources/pubmed.xsl
src/main/resources/templates/default-index-body.vm
src/main/resources/templates/default-index-footer.vm
src/main/resources/templates/default-index-header.vm
src/main/resources/templates/default-index.vm
src/main/resources/templates/endpoints.vm
src/main/resources/templates/error.vm
src/main/resources/templates/footer.vm
src/main/resources/templates/header.vm
src/main/resources/templates/page.vm
src/main/resources/templates/proptable.vm
src/main/resources/test.log4j.properties
src/main/resources/xslt/biomart-query.xml
src/main/resources/xslt/biomart-querytransformation.xsl
src/main/webapp/META-INF/MANIFEST.MF
src/main/webapp/WEB-INF/urlrewrite.xml
src/main/webapp/WEB-INF/web.xml
src/main/webapp/redirectToId.jsp
src/main/webapp/serverstats.jsp
src/test/java/org/bio2rdf/test/Bio2RDFWebTest.java

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Click the following link to download bio2rdf-webapp-master.zip.

bio2rdf-webapp-master.zip




















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